| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021056 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0225670 | Ga0210244 |
| Sample Name | Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_0mM |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 101136936 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 10 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025010 | Metagenome / Metatranscriptome | 203 | Y |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F053251 | Metagenome / Metatranscriptome | 141 | N |
| F074505 | Metagenome / Metatranscriptome | 119 | N |
| F076927 | Metagenome / Metatranscriptome | 117 | Y |
| F088418 | Metagenome / Metatranscriptome | 109 | N |
| F102393 | Metagenome / Metatranscriptome | 101 | N |
| F104431 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0210244_101150 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 22643 | Open in IMG/M |
| Ga0210244_101175 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 22250 | Open in IMG/M |
| Ga0210244_101966 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 14557 | Open in IMG/M |
| Ga0210244_106796 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1741 | Open in IMG/M |
| Ga0210244_108114 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1204 | Open in IMG/M |
| Ga0210244_110180 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 818 | Open in IMG/M |
| Ga0210244_110871 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 745 | Open in IMG/M |
| Ga0210244_111900 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 665 | Open in IMG/M |
| Ga0210244_113789 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 562 | Open in IMG/M |
| Ga0210244_114756 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 522 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0210244_101150 | Ga0210244_10115034 | F039966 | MSDDQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAEELVVLREMCEADSMPARLEQCSISELFRLVEGASFLDASGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEVAL |
| Ga0210244_101175 | Ga0210244_10117514 | F076927 | MLPCTETSNVPGLNRGLQLAVPSHRRELQTEVSTSADLTSALANTAVSRIVLASGTYNLIAELSITRSVILEAAAGATVTLNAQAINSTSSRRVLNINPGSSGVVQLIGLGITGGYIGGVRAHVQKLPWPQWESC |
| Ga0210244_101966 | Ga0210244_1019661 | F053251 | MRASSAEETEEAPTAKEAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPLPTIMASTLQMVCKLMDPDYTWPSSDEHSVVQLIQLIEDALYLDAPVVALKHIQREIASRLNGKRAPELCALIGAGGDFGSAEKQAPPNAEPAFVPEDVEAPQQPANSTLPPEPLQQPSFSADAMEAALGLVDVATLAELKGVTRSWRALAQ |
| Ga0210244_106796 | Ga0210244_1067962 | F025010 | AILAERLDAAANIEAIEKIRGAMDSLKTAGETAVHSATGTFLFVWAKVSNVISKRADFTYKLEAAAKSKSAVHSVTLVRPETEAEFYEMTHLFIMTVIALGLASATIVIKFIDDVVFGTVRMREPFTVAHELVVCYFREMDFDPARVLHMGNVFRRGGQDTLLSEARRNAAAFFRAGGGNLQPKGNNDDKLGNVKTVKTIKPNGKSDESSKKPCPDFNGGRPCKHLKPDGTCTLAHKCNQFVSDKGPGGYCMGPHARCTGCDYDAGKKLRAPAA |
| Ga0210244_108114 | Ga0210244_1081141 | F074505 | VLSVLQTVLQDAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRFMRYPDRADDRRASLFLRRGG |
| Ga0210244_110180 | Ga0210244_1101801 | F102393 | LCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK |
| Ga0210244_110871 | Ga0210244_1108711 | F104431 | MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCAS |
| Ga0210244_111900 | Ga0210244_1119001 | F104431 | KLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKAIKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG |
| Ga0210244_113789 | Ga0210244_1137891 | F088418 | LLLVAMLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDTKAIVQQVVDVLLKHSPSPAVHLEVLGRRWLALARNESVTKLTSTLLPAKVPAMNMRDKRAREVLELMPVTPDCPQVTIALLMSQASTHRSAADIRVLRRCGNRAVQLAEAGLKQPTSAMSKVVSAETIKALDAHRAAEAQK |
| Ga0210244_114756 | Ga0210244_1147561 | F074505 | RRCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQDAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |