NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021053

3300021053: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_32mM



Overview

Basic Information
IMG/M Taxon OID3300021053 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128781 | Gp0225669 | Ga0210243
Sample NameChrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_32mM
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85582456
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii6
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039966Metagenome / Metatranscriptome162N
F053251Metagenome / Metatranscriptome141N
F074505Metagenome / Metatranscriptome119N
F076927Metagenome / Metatranscriptome117Y
F082271Metagenome / Metatranscriptome113N
F090311Metagenome / Metatranscriptome108N
F102393Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0210243_101097All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii21236Open in IMG/M
Ga0210243_103144All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi6633Open in IMG/M
Ga0210243_103639All Organisms → cellular organisms → Eukaryota5039Open in IMG/M
Ga0210243_107902All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1009Open in IMG/M
Ga0210243_108509All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii904Open in IMG/M
Ga0210243_109141All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii818Open in IMG/M
Ga0210243_109286All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii803Open in IMG/M
Ga0210243_109365All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii796Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0210243_101097Ga0210243_1010971F039966MSDDQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAEELVVLREMCEADSMPARLEQCSISELFRLVEGASFLDASGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEVA
Ga0210243_103144Ga0210243_1031441F074505LPVLSVLQTVLQHAAEAFADKTKELSDVLGSINNDQLVAEPYLWLQHHPQRTRRRTADGPRTAQIASHGRLTACRSRLMKYPDRADDRRASLFLRRGALCMLACVILGILCA
Ga0210243_103639Ga0210243_1036393F053251MRATSIEEQVVAPTAKKAKREEQIRVRARDGEEVTLLRDAARLMGTLKDLMDLATSEDGIYPMPTITASTLQMVCKLNDPDYTWPSSDEPSLFQLFQLIEDALYIDAPIALKHIQRAIASQLNGKRAPELCALVGAGGDFDSAEEHAPPHVEPAFVPEGVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELK
Ga0210243_107902Ga0210243_1079021F090311EERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWMSYAEKHAQASRVLAGALSSLQPEGRAMRWAFNKWWGDCNALQSVRRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSW
Ga0210243_108154Ga0210243_1081541F076927MAPPPLPCTVLPCTEASIFPGLHSVPLVPSHRRELQTAVSNSYGLTRALANTTVGRIVLAPGTYYLNAELSITRSVILEAAVAGSVVLNAQASSSSR
Ga0210243_108509Ga0210243_1085091F082271GLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNT
Ga0210243_109141Ga0210243_1091411F102393LCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0210243_109286Ga0210243_1092861F090311MRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCSEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALGSLQPEGRAMRSALNTWAGVTMQRRSMIVAVSSLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSW
Ga0210243_109365Ga0210243_1093651F074505MLATARANRTDGDAEAGAAEAEKIKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLR
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