| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021052 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0225672 | Ga0210246 |
| Sample Name | Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_8mM |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 99689292 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 20 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 17 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007958 | Metagenome / Metatranscriptome | 341 | Y |
| F025010 | Metagenome / Metatranscriptome | 203 | Y |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F043264 | Metagenome / Metatranscriptome | 156 | Y |
| F053251 | Metagenome / Metatranscriptome | 141 | N |
| F062425 | Metagenome / Metatranscriptome | 130 | N |
| F069666 | Metagenome / Metatranscriptome | 123 | Y |
| F074505 | Metagenome / Metatranscriptome | 119 | N |
| F078160 | Metagenome / Metatranscriptome | 116 | N |
| F082271 | Metagenome / Metatranscriptome | 113 | N |
| F088418 | Metagenome / Metatranscriptome | 109 | N |
| F090311 | Metagenome / Metatranscriptome | 108 | N |
| F102393 | Metagenome / Metatranscriptome | 101 | N |
| F104431 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0210246_100063 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 78797 | Open in IMG/M |
| Ga0210246_100846 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 26929 | Open in IMG/M |
| Ga0210246_100930 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 25558 | Open in IMG/M |
| Ga0210246_101715 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 15977 | Open in IMG/M |
| Ga0210246_102616 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 10291 | Open in IMG/M |
| Ga0210246_102888 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 9001 | Open in IMG/M |
| Ga0210246_103593 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis | 6405 | Open in IMG/M |
| Ga0210246_103807 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 5755 | Open in IMG/M |
| Ga0210246_106434 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii | 1856 | Open in IMG/M |
| Ga0210246_106844 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1632 | Open in IMG/M |
| Ga0210246_107337 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1429 | Open in IMG/M |
| Ga0210246_108176 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1167 | Open in IMG/M |
| Ga0210246_109348 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 948 | Open in IMG/M |
| Ga0210246_109682 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 904 | Open in IMG/M |
| Ga0210246_109683 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 904 | Open in IMG/M |
| Ga0210246_109876 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 881 | Open in IMG/M |
| Ga0210246_109932 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 875 | Open in IMG/M |
| Ga0210246_111063 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 761 | Open in IMG/M |
| Ga0210246_111161 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 753 | Open in IMG/M |
| Ga0210246_112741 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 637 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0210246_100063 | Ga0210246_1000631 | F102393 | VHVCSCFFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPK |
| Ga0210246_100846 | Ga0210246_1008461 | F088418 | MRCCSVRLLFVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMKKRDKRAREVLELMPVAPGCPQAIIALLMSQANTHRSAADIKVLRRCGAAAVQFAEAGRKQPTSATSKVVPAETIKALDAHRAAETQKNGKIRAWMRDEDVALLELHAGDLPMSTHHPALVNRSHSARRNRMLLL |
| Ga0210246_100930 | Ga0210246_10093016 | F007958 | FINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ |
| Ga0210246_101715 | Ga0210246_10171514 | F039966 | MSDGTERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQHALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEVA |
| Ga0210246_102616 | Ga0210246_1026166 | F069666 | QRVLCSRLCRRDGQPVPTRLDEITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR |
| Ga0210246_102888 | Ga0210246_1028887 | F062425 | VVGNLDLNLGSKDVPVHVAQFCRFKDCFVRPERSTSPTSLSALVLDMGKKGKGKAPAFLETPEALAPFSVQVRDIIATPLGVEATVVGVGSKDGALYLCWPGGIISPASPAPAKAKNKSELEAFGYARRPQSAHIQRDITERWRTQYEQRRYGKPGPKTAAIKLPLGPNGSAGSAAFAAFAASEAAKRPQTAP |
| Ga0210246_103593 | Ga0210246_1035938 | F078160 | MRAPSTEEQEEAPAAKKAKHEEQIRVRARGGEEVTLSRDAARFMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSDE |
| Ga0210246_103807 | Ga0210246_1038071 | F043264 | VSTAADLTSALANTAVGRIVLASSTYYLTAELSITRSVVLEAAAGATVTLNAQASSSSPRRVLNINPGSSGVVQLIGLGITGGYMG |
| Ga0210246_106434 | Ga0210246_1064342 | F074505 | MPTTARANRTDGDAEAGAAEAEKCKKARVTLPMLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHMSTT |
| Ga0210246_106844 | Ga0210246_1068441 | F104431 | MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG |
| Ga0210246_107337 | Ga0210246_1073372 | F025010 | ESLKSAGETAVHSATGTFLFVWAKVSNVISKRADFTYKLEAAAKSKSAVHSVTLVRPETEAEFYEMTHLFIMTVIALGLASATIVIKFIDDIVFGTIRMKESFQVAHELVICYFREMDFDPARVLHMGNVFRRGGQDTLLSEARRNAAAFFRAGGGNLQPKGNNDEKLGNVKTIKNTKPNGKSDESSKKPCPDFNGGRPCKNLKSDGTCTFAHKCNQFVSDKGPNGYCMGPHARCNGCDYDAGKKLRAPAAQ |
| Ga0210246_108176 | Ga0210246_1081761 | F039966 | MSDGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEATAGSAGGAPALQPQLTLWMAVTDDAKEVALGMVDVVTLAELKGVSRSWLALARRVLCSRLSRCEGQPAPTQLAEITDLNIKVLVDAGRPWEAAAAGRMLPSLARLRWEGFEVNV |
| Ga0210246_109348 | Ga0210246_1093481 | F078160 | MRAPSAEDKGEATTAKEAKHVEPIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPLPT |
| Ga0210246_109682 | Ga0210246_1096821 | F090311 | VSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIKSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEG |
| Ga0210246_109683 | Ga0210246_1096831 | F090311 | EGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVL |
| Ga0210246_109876 | Ga0210246_1098761 | F090311 | SVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEG |
| Ga0210246_109932 | Ga0210246_1099321 | F082271 | AMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCSEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALGSLQPEGRAMRSALNTWAGVTMQRRSMIVAVSSLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGW |
| Ga0210246_111063 | Ga0210246_1110631 | F053251 | MRATSAEEQEEALPAKKAKHEEPIRVRARDGEVVMLSQDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSDEPSLYQLIQLIEDALYLDAPIALKHIQLVIASRLNSMRAPVLGALIGAGGDFGSAEEHASHAAPVDGQRADELRKRYSRMRVEELRCK |
| Ga0210246_111161 | Ga0210246_1111611 | F074505 | MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQDAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA |
| Ga0210246_112741 | Ga0210246_1127411 | F078160 | MRAPSAEEQEEAPTAKKAKHEEQICVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |