| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021050 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0225673 | Ga0210247 |
| Sample Name | Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_16mM |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 106321042 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 11 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 10 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007958 | Metagenome / Metatranscriptome | 341 | Y |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F074505 | Metagenome / Metatranscriptome | 119 | N |
| F076927 | Metagenome / Metatranscriptome | 117 | Y |
| F078160 | Metagenome / Metatranscriptome | 116 | N |
| F088418 | Metagenome / Metatranscriptome | 109 | N |
| F098631 | Metagenome | 103 | N |
| F102393 | Metagenome / Metatranscriptome | 101 | N |
| F104431 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0210247_100124 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 64799 | Open in IMG/M |
| Ga0210247_100489 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 37110 | Open in IMG/M |
| Ga0210247_101094 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 23310 | Open in IMG/M |
| Ga0210247_103035 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 8263 | Open in IMG/M |
| Ga0210247_108056 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1317 | Open in IMG/M |
| Ga0210247_108515 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1208 | Open in IMG/M |
| Ga0210247_108975 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1125 | Open in IMG/M |
| Ga0210247_110503 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 928 | Open in IMG/M |
| Ga0210247_111836 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 818 | Open in IMG/M |
| Ga0210247_113992 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 685 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0210247_100124 | Ga0210247_10012422 | F007958 | MGIDTTLPGDMGVFDTEGLGEGEPIWDRMCFFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ |
| Ga0210247_100124 | Ga0210247_10012427 | F007958 | MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ |
| Ga0210247_100489 | Ga0210247_10048917 | F078160 | MRATSAEEQEEAPAAKKAKHEEPIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMV |
| Ga0210247_101094 | Ga0210247_1010941 | F039966 | MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVNRSWLALARRVLCSRLSR |
| Ga0210247_103035 | Ga0210247_1030359 | F098631 | MSAGSAWPLVGGALVSHGSLVRVRPASDATSLSLLCIPSSRAECDFLTHVTAVQGWVLDFDQHHGAWHIFLFCFLRDVVIPSEHMVVTSCIPMSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGPQCVSQACRYRDFLRSLPVDAWLHHVFLPDPSMLPSFLLA |
| Ga0210247_108056 | Ga0210247_1080562 | F074505 | RCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGAMCMLACVVQGILCSLCRFPYCSVRHTSTTLCCMSPYSP |
| Ga0210247_108515 | Ga0210247_1085152 | F104431 | MVPKKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKAIKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG |
| Ga0210247_108975 | Ga0210247_1089751 | F074505 | SGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQDAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFSRRGALCILACVVQGILCA |
| Ga0210247_110503 | Ga0210247_1105032 | F076927 | MAPPPLPCTVLPCTETSDVPGLYRGLQLAVPSHRRELQTAVSTSAGLVSALANPAVGHIVLAPGTYNLSAELNITRSVVLEAAVAGSVVLNAQASYSSQRRVANINPGPSGVVQVIGLNITG |
| Ga0210247_111836 | Ga0210247_1118361 | F102393 | LCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK |
| Ga0210247_113992 | Ga0210247_1139921 | F088418 | GLACLSLAHSPAFCMRCCVRLLLVAMLATQHTDFESFANALGTLPNQPPVPMACEPSPSPIDFDAKAIVQHVVDVLLKHSPSPAVHLEVLGRRWLAIARNESVSNLTSTLLPAKVPAMKMRYNAARAVLELMPVTPGCPQATIALLMSQANTHRSKADIKVLRRCGAAAVQLAEAGLKQPTSATSNSKRLNGGLEHGPVLLDVVCGEALDECVKGH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |