NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021049

3300021049: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_0mM



Overview

Basic Information
IMG/M Taxon OID3300021049 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128781 | Gp0225665 | Ga0210239
Sample NameChrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_0mM
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size84899382
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii9
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007958Metagenome / Metatranscriptome341Y
F039952Metagenome / Metatranscriptome162N
F043264Metagenome / Metatranscriptome156Y
F053251Metagenome / Metatranscriptome141N
F074505Metagenome / Metatranscriptome119N
F088418Metagenome / Metatranscriptome109N
F090311Metagenome / Metatranscriptome108N
F098631Metagenome103N
F104431Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0210239_100108All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii62210Open in IMG/M
Ga0210239_101774All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii14656Open in IMG/M
Ga0210239_102063All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii12515Open in IMG/M
Ga0210239_103361All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii5943Open in IMG/M
Ga0210239_103403All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii5780Open in IMG/M
Ga0210239_104451Not Available3152Open in IMG/M
Ga0210239_105352All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1969Open in IMG/M
Ga0210239_105893All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1534Open in IMG/M
Ga0210239_106433All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1210Open in IMG/M
Ga0210239_107512All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii832Open in IMG/M
Ga0210239_108531Not Available634Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0210239_100108Ga0210239_10010814F007958MGIDTTLPGDMGVFDTEGLGEGEPIWDRMCFFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0210239_100108Ga0210239_10010819F007958MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0210239_101774Ga0210239_10177413F088418LVAMLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDAKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKAPAMKMRDNRAREVLELMPVTPGCPQATIALLMSKASTHRSAADIKVLRRCGNRAVQLAEAGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWVRAEDVALLELHAGDLPMSTHHPALVN
Ga0210239_102063Ga0210239_10206310F039952VADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGEERPRVPPSSALP
Ga0210239_103361Ga0210239_1033614F053251MRSTTAEEQGEARTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSDEPSLFRLIQLIEDALYLDAPIALKHLQRAIASRLNGKRAPELCALIGAGGDFGSAEEHALPNAEPAFVPEDVVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELKGVTRSWRALAQRVLC
Ga0210239_103403Ga0210239_1034033F043264VSTAADLTSALANTAVGRIVLASSTYYLTAELSITRSVVLEAAAGATVTLNAQASSSSPRRVLNINPGSSGVVQLIGLGITGGYMGGAGGVFVG
Ga0210239_104451Ga0210239_1044512F098631MSAGSAWPLVGGALVSHGSLVRVRPASDATLLSSLCGPASRAECDFLAHVTAVQGWVLDFDQHQGAWHIFLFCFLRDVIIPSEHMVVMSCIPMSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGAQCVSQACRYRDFLRSLPVDAWLQYVFLPDPSMLPSFLLA
Ga0210239_105352Ga0210239_1053522F074505MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEAFADMTKELTDVLGSINNDQLVAEPDVWLQPRQQRTRRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHWSRFRTADLPYT
Ga0210239_105893Ga0210239_1058932F104431MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHDICLRHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSARDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG
Ga0210239_106433Ga0210239_1064331F074505TARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0210239_107512Ga0210239_1075121F090311GERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIKSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSS
Ga0210239_108531Ga0210239_1085311F098631MSAGSAWPLVGGALASHGSLVRVRSASDATSLSSLCSPSSRAECEFLSQVTAVQGWVLEYHQQSSSWHIFLFCFLRDIIIPSEHMEVISCIPMSLAFRDILLANRCGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEQGSISGPQCVSQACRYRDFLRSLPVDAWLHYVFLPDPSMLP
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