| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020734 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0054266 | Ga0214235 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 hypolimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 153665877 |
| Sequencing Scaffolds | 27 |
| Novel Protein Genes | 30 |
| Associated Families | 27 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 7 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 5 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter xylosoxidans | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → hypolimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001443 | Metagenome / Metatranscriptome | 693 | Y |
| F002824 | Metagenome | 527 | Y |
| F006255 | Metagenome | 377 | Y |
| F007166 | Metagenome / Metatranscriptome | 356 | Y |
| F007405 | Metagenome | 351 | Y |
| F021463 | Metagenome | 218 | Y |
| F022814 | Metagenome | 212 | Y |
| F023091 | Metagenome / Metatranscriptome | 211 | Y |
| F025024 | Metagenome / Metatranscriptome | 203 | Y |
| F025903 | Metagenome | 199 | Y |
| F030662 | Metagenome | 184 | Y |
| F034043 | Metagenome / Metatranscriptome | 175 | N |
| F042065 | Metagenome | 159 | N |
| F043282 | Metagenome / Metatranscriptome | 156 | Y |
| F044882 | Metagenome / Metatranscriptome | 153 | Y |
| F051683 | Metagenome | 143 | Y |
| F051875 | Metagenome / Metatranscriptome | 143 | N |
| F053292 | Metagenome | 141 | Y |
| F054474 | Metagenome / Metatranscriptome | 139 | N |
| F058703 | Metagenome / Metatranscriptome | 134 | Y |
| F059611 | Metagenome | 133 | Y |
| F064436 | Metagenome / Metatranscriptome | 128 | Y |
| F074306 | Metagenome / Metatranscriptome | 119 | N |
| F083609 | Metagenome / Metatranscriptome | 112 | N |
| F085161 | Metagenome / Metatranscriptome | 111 | N |
| F094773 | Metagenome | 105 | N |
| F100394 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214235_1015912 | All Organisms → Viruses → Predicted Viral | 1295 | Open in IMG/M |
| Ga0214235_1019745 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1136 | Open in IMG/M |
| Ga0214235_1023352 | All Organisms → Viruses → Predicted Viral | 1026 | Open in IMG/M |
| Ga0214235_1034851 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 806 | Open in IMG/M |
| Ga0214235_1036006 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo | 790 | Open in IMG/M |
| Ga0214235_1038078 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 763 | Open in IMG/M |
| Ga0214235_1038767 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 755 | Open in IMG/M |
| Ga0214235_1039077 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 751 | Open in IMG/M |
| Ga0214235_1040250 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium | 738 | Open in IMG/M |
| Ga0214235_1044591 | Not Available | 692 | Open in IMG/M |
| Ga0214235_1045174 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 687 | Open in IMG/M |
| Ga0214235_1055268 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 608 | Open in IMG/M |
| Ga0214235_1058421 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 588 | Open in IMG/M |
| Ga0214235_1060195 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 577 | Open in IMG/M |
| Ga0214235_1060714 | Not Available | 575 | Open in IMG/M |
| Ga0214235_1061338 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 571 | Open in IMG/M |
| Ga0214235_1061381 | Not Available | 571 | Open in IMG/M |
| Ga0214235_1063531 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 559 | Open in IMG/M |
| Ga0214235_1065506 | Not Available | 548 | Open in IMG/M |
| Ga0214235_1065548 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter xylosoxidans | 548 | Open in IMG/M |
| Ga0214235_1067044 | Not Available | 541 | Open in IMG/M |
| Ga0214235_1068831 | Not Available | 532 | Open in IMG/M |
| Ga0214235_1069466 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 529 | Open in IMG/M |
| Ga0214235_1070580 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 524 | Open in IMG/M |
| Ga0214235_1071126 | Not Available | 522 | Open in IMG/M |
| Ga0214235_1072270 | Not Available | 517 | Open in IMG/M |
| Ga0214235_1076278 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214235_1011308 | Ga0214235_10113081 | F094773 | MDTKEQDPSRQIALEIFQLLTPKAEVDANIILAAVSMVLSTIAVEMGMEEEKAVYAFTRSFRNAKSRLKRLVKQVH |
| Ga0214235_1012700 | Ga0214235_10127003 | F022814 | MKLMPSVVRNLYASHCCCYPFTRWAMPLPESVDFIITGDPEVMGTYLYGPGEAFEYTITISEARCGHFYTVLTILAHESIHMSFHRQKGDKWAQHGVEFRRRCKRVANELGLDPLEL |
| Ga0214235_1015912 | Ga0214235_10159121 | F074306 | MKILLLDPAGALVDFGVRCLAEGHEVKQWIRPHGQERSKIGKGLIDQVQNWQIHARQADLIVLSDNAFQMRELEKFHEEGYPIIGTNMLGAKMELDRDYGQDIMK |
| Ga0214235_1019745 | Ga0214235_10197451 | F023091 | MALFSKNTLTQVSGFDNQIIAGELVYDQKTFWNLALNTDGVPINLTGVTIDAQIIRRQVSNLQDTRYGLSFDIADYVPEPDPVTLTITNRIDANGFFTLVIDESAW |
| Ga0214235_1023352 | Ga0214235_10233522 | F100394 | MKIYVTGTSNLGDFLNAMPVLSGVTKSYGKYSLIIKASMKKFKGIKEFLMYQDLFSDVEFDDDIIPYGDMIQLSSWPSRETKGDPDRPIETCRYENWLRDKYDLMFEVNDKFVVLTPEMDIEIKDAYYVGDR |
| Ga0214235_1029807 | Ga0214235_10298071 | F025903 | MIDITEEPNLISFAGNPVIYEACSDNYLISLGTPAHFELVVSSIDSTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVAYIGQTFNDFANNIYQCFLSNYEIQKYFNVTLDPPGTSQRSIKLQAKESGSDGSVVLSNVGVTGVAAGINTPGTDDVYRDYFGILCLIRDTWNNPIGEDIKPSDFIGCARFDISDYIRSKFAAWEMTRFEFPELAGNVRVHGWDYLLKYRVSFAESI |
| Ga0214235_1034851 | Ga0214235_10348511 | F058703 | RRNKSFLTLLYPKITLLLVGFFIISLYFNSQIWYNYYMELRKGTKMLKNAKLASVGDVIRGYDFKPMVGRNDCYAEGTVESISNEMGYMAYKITCTTDVFDGKKQPKGKHSRVGKIVFVPFEVSFMEYDGRILNLSK |
| Ga0214235_1036006 | Ga0214235_10360061 | F034043 | VTFGHIMGGCPWVLNVENKTSPNEDRYTWRHNNVLRVLCNAIIHKVQQCNADNHKNNISGIQFVKEKASATTINTAKTQSKRKTFYGDLAGANDWTVFFELPELKEFSIKHFPQDICQTKKEVDAFVISQSRKICLVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQHFGFTSKELKKLVDECSLVSRRSSYYIWLNRFHQSFIPFQMVQIDIAAYKSIAVV |
| Ga0214235_1038078 | Ga0214235_10380781 | F059611 | MKDFSLPFLVSKKLLDGYYDAMLKQDKQRAYEIATDL |
| Ga0214235_1038767 | Ga0214235_10387671 | F053292 | MPNLTTILAVSEQVTINDQRFVGQVVSRNQRISTSEILTVVPFQFEFKPNDYLLYSQNRDLLANLRYYDKSLTQYLNFGSTGWANYISYRGQMTSTEISN |
| Ga0214235_1039077 | Ga0214235_10390771 | F002824 | NGKPNAEEMAIVKTILNPAENKTEEKKPVLQIEPEKPVIPAPEPKKEMTMLEKILKIENLQLVIEKRAKLVQTRSELDRFQISSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF |
| Ga0214235_1040250 | Ga0214235_10402502 | F006255 | MGELNQLMREHEEFLESALDDMEFGGELSQEQVDCIRQACGKPKHNVVLKELFDDFGAIFGNPLESFPSIRGQK |
| Ga0214235_1044591 | Ga0214235_10445911 | F034043 | IVCKVQQRNQDSQKDTAPGIHFVKEKATASTISSAKTHNKKKTFYGDLATSNDWTVFFELPELKAFSIKHFPQDICQTTKQVDAFVISRSRKICFVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQLFGFTSKELKALVDECSLVSRRSSYYIWLNRFHQTFIPFQMVQVDIESYQSIAVV |
| Ga0214235_1045174 | Ga0214235_10451743 | F051683 | MILELDDDFTDEITTANLAQSYVSIKNMLKNGGSWHEDDVAAWKELLPAIKLVGNWYSIDFNADIKQAKKAPTR |
| Ga0214235_1055268 | Ga0214235_10552683 | F007166 | MDELSQVMTEMEERLEVALDNMEFGTDLSADDIDVIRAACGKPNNKRNMLLQSVFEDFGN |
| Ga0214235_1058421 | Ga0214235_10584212 | F007405 | MVTHIGTAHSFTYDGAQLNVYHANKGEGLPKHDHIYSHATMCNSGSCLVSLEGRSYTINKNSQPLNLPAGEWHEIEALED |
| Ga0214235_1060195 | Ga0214235_10601952 | F021463 | VRLEVKTDNHEDDIRELRETSIDLKTTMHSIEKSLNQIKYLAIGALAVVIAQTIGLDKAIKLMFGS |
| Ga0214235_1060714 | Ga0214235_10607142 | F064436 | VPEQTGFADAAIKMLTGRFGLTVMVTVFDVAGLPVAQVALEVKTQVMVLLFAGVYV |
| Ga0214235_1061338 | Ga0214235_10613383 | F025024 | MTTDQKLDRMEFIAQSDEFLPEYESSIKSDALALIREIKDEVKEISLRTLIAVSKIRASNKDWKDLATYMLTA |
| Ga0214235_1061381 | Ga0214235_10613812 | F042065 | MWNNVQEFRDWYMASGMPLRPPFKNPVFHTDNAMSLCMFREGRFQVELYLTEPYSTSPPHTHPGVDSAFVYLAGNIQFSLEGRDNPDVQQWQKPSPEGYHMLLGKTVDSPDGIPHWLKIGPEGGAFLSFEHWKDKDPVSVTVNW |
| Ga0214235_1063531 | Ga0214235_10635311 | F001443 | MYETTVRTPAGETKDRVFASNAQEAKKLFEQRHGPRNVPYIPHMIPS |
| Ga0214235_1065506 | Ga0214235_10655061 | F044882 | MCQSYLVPTLTVLVKKYTPCQGVVWSQYRLLGTFYVALGFGVVLFAKVCFFLPAQFCKVVDFTLALLYPNFKLQYLMNYSSNFNN |
| Ga0214235_1065548 | Ga0214235_10655482 | F021463 | LENRVVRLEVRTDNHEEDIKELRESTLDLTSTMHSIEKNLSQIKYLAIGALAVVLAQTVGLDKALKVLFGT |
| Ga0214235_1067044 | Ga0214235_10670442 | F051875 | MSSTISTLEEVANQFQVWRDNKKNSKFSPIPPHLKAHARQLLTSYSISQVAAALNISRSFLYNIQKDQNYSLDSKNQQTSVTESLNFIPFNFVDPNQQKKNHLINPAPPLKFTCEIIKPNGI |
| Ga0214235_1068831 | Ga0214235_10688311 | F034043 | IMGGCPWVLNVENKTSPNEDRYTWRHNNVLRVLCNAIIHKVQQCNADNHKNTISGIQFVKEKASATTINTAKTQSKRKTFYGDLAGANDWTVFFELPELKTFSIKHFPQDICQTKKQVDAFVISQSRKICLVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPRWKLKCIVAEV |
| Ga0214235_1069466 | Ga0214235_10694661 | F043282 | MMIEKEDKMKVNTGDVIRSYDFKPMVGREDCFVEGEVLALTNEQGYDAYKIRVTKDSWSDATDKGRVGKIVFVPVEVSFMEY |
| Ga0214235_1070580 | Ga0214235_10705801 | F083609 | MGTHILPFQILNDGYRNATLKIAGYVNGTDITAYTVLDPSTLSPIDAQGTLAKTVRIKRINFDIQDGIQATLNWDGATPQLLWECTGRGEIKAGPFGGFTDNATTPNGNITLTTLGGAT |
| Ga0214235_1071126 | Ga0214235_10711262 | F030662 | RLKDKNGPIPSGLWYEYSDDKGTKYRVNGMEMTYGRQFSNKVASDMKNNNVEVPDNLDYLIEQQICGRIPGQYCWQEAGDKVANVIHTFASLGDRVAATLGVQTNLEQAARGCTACQKRRQAMNQTLG |
| Ga0214235_1072270 | Ga0214235_10722703 | F085161 | MEVYIVKSFGPENGWVNLKVFDNNDAAVGFARNIEMQIKPEDLDETESVEIECFTVRSW |
| Ga0214235_1076278 | Ga0214235_10762781 | F054474 | TNYGGGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATNTVYRGVVFYLPYSCNITDVIFDVGTVPKDSAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLGMTTSVAGLSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |