Sample 3300020701

Basic Information
IMG/M Taxon OID	3300020701 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053747 \| Ga0214242
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020701 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0053747 | Ga0214242

Sample Name

Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 hypolimnion

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	84540196
Sequencing Scaffolds	29
Novel Protein Genes	32
Associated Families	26

Dataset Contents

Total Genome Size

84540196

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5
Not Available	20
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → hypolimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007405	Metagenome	351	Y
F008414	Metagenome	333	Y
F013732	Metagenome / Metatranscriptome	268	Y
F022249	Metagenome / Metatranscriptome	215	Y
F023091	Metagenome / Metatranscriptome	211	Y
F026565	Metagenome / Metatranscriptome	197	Y
F028687	Metagenome / Metatranscriptome	190	Y
F032132	Metagenome	180	Y
F040982	Metagenome / Metatranscriptome	160	N
F042135	Metagenome / Metatranscriptome	158	N
F044882	Metagenome / Metatranscriptome	153	Y
F047451	Metagenome / Metatranscriptome	149	N
F049449	Metagenome	146	Y
F054521	Metagenome	139	Y
F058633	Metagenome	134	Y
F065359	Metagenome / Metatranscriptome	127	Y
F067246	Metagenome	126	Y
F067350	Metagenome / Metatranscriptome	125	Y
F068380	Metagenome	124	Y
F070806	Metagenome / Metatranscriptome	122	N
F073009	Metagenome	120	Y
F078138	Metagenome	116	N
F082043	Metagenome	113	Y
F091219	Metagenome / Metatranscriptome	107	N
F096500	Metagenome	104	Y
F100394	Metagenome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214242_1001685	All Organisms → Viruses → Predicted Viral	4077	Open in IMG/M
Ga0214242_1005052	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1994	Open in IMG/M
Ga0214242_1005205	Not Available	1960	Open in IMG/M
Ga0214242_1006917	Not Available	1610	Open in IMG/M
Ga0214242_1007255	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1557	Open in IMG/M
Ga0214242_1010030	All Organisms → Viruses → Predicted Viral	1249	Open in IMG/M
Ga0214242_1013108	Not Available	1032	Open in IMG/M
Ga0214242_1013231	Not Available	1026	Open in IMG/M
Ga0214242_1016634	Not Available	874	Open in IMG/M
Ga0214242_1016647	Not Available	873	Open in IMG/M
Ga0214242_1016918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	862	Open in IMG/M
Ga0214242_1017796	Not Available	832	Open in IMG/M
Ga0214242_1019345	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	788	Open in IMG/M
Ga0214242_1019677	Not Available	779	Open in IMG/M
Ga0214242_1023858	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	687	Open in IMG/M
Ga0214242_1024350	Not Available	678	Open in IMG/M
Ga0214242_1024843	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	669	Open in IMG/M
Ga0214242_1026221	Not Available	646	Open in IMG/M
Ga0214242_1028903	Not Available	607	Open in IMG/M
Ga0214242_1031819	Not Available	570	Open in IMG/M
Ga0214242_1032974	Not Available	558	Open in IMG/M
Ga0214242_1033428	Not Available	554	Open in IMG/M
Ga0214242_1034024	Not Available	547	Open in IMG/M
Ga0214242_1035446	Not Available	533	Open in IMG/M
Ga0214242_1036055	Not Available	527	Open in IMG/M
Ga0214242_1036140	Not Available	527	Open in IMG/M
Ga0214242_1036381	Not Available	525	Open in IMG/M
Ga0214242_1037639	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	514	Open in IMG/M
Ga0214242_1038272	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214242_1001685	Ga0214242_10016851	F040982	MTRRKKRDLVASGKWWSDSQKLEAATTYLALGNGAQTAAVLDIPIQTFNRWKYTDWFKKIVEDLKSEDSLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIESKPQQEQIEKTVDDRLAKLAEQFKAFAKPKEKDITP
Ga0214242_1005052	Ga0214242_10050521	F008414	MSQVIIHETANGNVAVTVPTGEIHINEVLTKDCPAGAIIVDDSVLPQGSDAQFFDAWELAGGKVTVNFTKAQAIRLAQFNAAAVQVAQARQLNTLAGIANAVADADFIAALTAGR
Ga0214242_1005205	Ga0214242_10052052	F070806	MDWFHKLSTVILIILAHYYDFVLGRRACCAHFCITDDLEKSNEMINHCMDHVREFYDRKNAAAVPVQPPNAHLFLGSDNAANQAKNNYHFAWMVDYVEEDHGLQTIQQNFTAEQHGKGTNLVSFLSQH
Ga0214242_1006917	Ga0214242_10069172	F070806	MSQMDWFKKLSTCILIILANYYDYVLGRRACCTHFCITDDLEKSNEMITFCVDHVREFYDRKNAACMPPQPPNAHLFLGSDNAANQAKNNFHFAWMVDYVEEDHGLQTIQQNFTAEQHGKGYNFFFLIWT
Ga0214242_1007255	Ga0214242_10072553	F026565	MAMFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPISLTITNEVAAQGKFTLVINDSTWGLMSDDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE
Ga0214242_1007255	Ga0214242_10072554	F007405	AQLNIYHANKGEGLPKHEHIYSHATMCNSGSCLVSLEGRSYTMNKNSTPLNLPAGEWHEIEALEDGTVFVNVFAEGKY
Ga0214242_1007699	Ga0214242_10076992	F067246	DELPAVQDALSGYAQYRQLTEQYADLVIQETRQNIAAAKKKHLTRPPSSSRRKKKSSN
Ga0214242_1010030	Ga0214242_10100303	F040982	SESQKIEAATTFLALGNATQTAAVLNIPKATFDRWRYSEWFKKIVDDLKAEDNLKLNSRLTKIISKALDVTEDRLEKGNYQYDPKTSELVRVPVSLKDATKVANDMLERRDVIESKPMQEQIEKTVDDRLAKLAEQFKSFAGKSREKDITPKPLTIDV
Ga0214242_1013108	Ga0214242_10131081	F049449	MANLKPLPPKMIERFADKAPRIADPHSKPRILGLDVVNPTNATLDTVNKDTLQVRRTFKDATQAHAAYRRLKQENVERNRKNQLIQKKLNNEPPYQAKKLESMGQNWRSNRPTGFLSTIVSRIQPPFRQVIEQAATLTFAKYPIESIDAENKTKIFREEITKCIRGWKGHDDLVAQTTHENTTFGFCGWAWDDLRDWKPEFLRQDYTFFSIETPQDTNATPIWGRKRRYQISELLPILESPELSAMAGWNINNLVKSINAAIPAGRTLDADEDARRYEDWIREGSYGASYENDAKYVELGELLIKEPHGKISRF
Ga0214242_1013231	Ga0214242_10132312	F042135	VLFLVPGAIVPLMKDPLKVLNYDSWWRKDLNNILPYVIPAVNEDITQKMELQLEDSSNRIDNTGSNGEAIVSHLQSLIDEQKVEHSFPFSWNLKLYKAPPKKACTNFEFSPEQLAIIENVHMDNAQKRTFNLEPCVILHQSARLETSHFCIIKCAKDTSTPFYVAEVISNNNDSLTVQWWAPTAISKSKGGKYHNHAFEAQTTKHRILNRQKGAPQWRLKPHLDNVNYNTVYFGFSKMTRDRRLPAEVLRKLRSLALISKNIKIKRM
Ga0214242_1016634	Ga0214242_10166342	F028687	MEINYIHENPKAVLRQEHAATMRLQLEETLWTFNGIFFVTLFLNEAVQRLTFGYVTRSTSFNDVRFHLHILEPYVEGGQPPSNYFNYHTFLMPQQVCYSRNCACPLLHTQSVEYSKILTICLAETAAGNRVHTVGPVDKIGPAGYTVFQIKGSYEDQELSKYKSLRLKLHAPYTV
Ga0214242_1016647	Ga0214242_10166471	F047451	YAFCFTAIKRLAGAGHVIAPNTIRIPINDGLVFNCTWDKTLRMGVHCFGFLCVKSKEKWCAHCIIDEWVLYAKTFNIPFNEGLLFPRLKRKGLVDCNKRWKAKNILDSLERDLKRYGLYQGETAQSFRHGGTVDSLETGQDLERTMYLAFMKNKTTAQNYAKGLCYLFPKHNWKKAGVDTSEIDSVTLALQMQSWRAWKNEGPPISAPL
Ga0214242_1016918	Ga0214242_10169182	F023091	MAVFNKNTLTQVSGFDNQIIAGELVYQQKTFWNLALTNSDGTPMDLSTATIDAQIIRRELTNVRDSRYGLAFDINDYT
Ga0214242_1017796	Ga0214242_10177961	F028687	MRKTKNSETQLAVFISLNAHKENMVINYVEEHPKAILRADHAASIRLQLEETLGTFNGFFFVTLYLNATVQRVSFGYVSRQSTFNDVRFRLHVLRPYSQAGQQPSNYFNFNTFLMPRRLCYNRNCHCPLQHSELIEYSKILTIAVATTNAGNKVSTVGIVDSLSDNNYAVFSFKGTYEDQELSRYKALRVKLHGPYTI
Ga0214242_1019345	Ga0214242_10193451	F100394	MKIYVTGTSNLGDFLNAMPVLSGVTKSYGKYSLIIKASMKKFKGIKEFLMYQDLFSDVEFDDDIIPYGDMIQLSSWPSRETKGDPDRPIETCRYENWLRDKYDLMFEVNDKFVVLTPEMDIEIKDAYYVGDRWAVGEIDTRRETHVLSYLKDCEFINFDNDMLTNAYIIKNLKKPFITNFTGV
Ga0214242_1019677	Ga0214242_10196772	F067350	MKGENMLKKKVFGEAAVVATLRRGHRQELYFEQIAVFRHSFMNYSG
Ga0214242_1023232	Ga0214242_10232321	F065359	MHDCNFADEVCVWVMSTLLWTCPQNHGHVDGLNVGSISCYFMLQITNLGVCECILCLCVMILHTPHMYFRLQPVLSANLCSVGFANVDIFCASVFYKNGHKSRVFEAMNTTIGAN
Ga0214242_1023858	Ga0214242_10238582	F082043	MAESFSYKITTESEVFTFDFSQVLLESETILTATCIAIVMNGVDNNPSAIVIGTPVIFNKTASQRIANGVSEVTYRLEMTITTSLGNTYVGVGDLDIYNADLV
Ga0214242_1024350	Ga0214242_10243501	F047451	QRRAIYAFCFTAIKRLAGAGHVIAPNTIRIPINDGLVFNCTWDKTLRMGVHCFGFLCVKGKEKWCAHCIIDEWVILARTHGISFDKGLLFPRIQSDGSVNHGQRWKAKHVLDSLERDLKRYHLYQGETAQSFRHGGTVNSLETGKNLEKTMYLAYMKNVSTAQIYAKGLSVLFPNHDWKKAGIDTSQEIDTVTLAMQMQGWRAFMSEGSSI
Ga0214242_1024843	Ga0214242_10248434	F054521	MSEKQTDAIKDFPMEAAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPAEPK
Ga0214242_1026221	Ga0214242_10262212	F022249	AVPLVAEEVRLFNERATTLSEIEKQSAGTAEQVMSQVARDLPSLTINGKPESEWKIRHVLIKSARSEMLLCSRDHEGEQQFGVVEKFDPQSPFARVHGDTDLQMTGNNAFVLLHNYVESERSVLQLFRKDIEATVEENLSEKLPNQNHSRVVRAISARCGSQVPVESEKEKPAKNVKIRM
Ga0214242_1028903	Ga0214242_10289031	F032132	GVRYHQVVREPTTMHEFIIEAMVTALKPVLKNPERALQVLEKFWANKMALVWDTGDVHTAANEREVALTNHEAIKVLQELHHYHNKQYGIKWEDLTAYIEEHCLGRKLTKAELKRFVERNLLTVERQHRKSQRR
Ga0214242_1031819	Ga0214242_10318191	F044882	MCQSYLVPTLTVLVKKYTPCQGVVWSQYRLLGTFYVPLGFGVVLFAKVCFFLPAQFCKGVGFTLALLYPNFKLQYLMNYSSDFNNFCRFQLL
Ga0214242_1032974	Ga0214242_10329741	F028687	YFFVTLFLNQAVQRVTFGYVTRATSFNDVRFRLHVLEPYVEPGKEASNYFNFHSFLMPTQICYNRNCACPLQHTQLVEYSKILTICVATTSAGNMVHTVGQIDNLSNGANVVFQFKGNYEEQELTRYKSLRVKLHAPYTI
Ga0214242_1033428	Ga0214242_10334281	F013732	MPAINLPNGQSAILFSTDEISERTNRMISRAFMKAAGSAAKLNNLGFDDSKPETWSIFAEISDEDQANLDGYQAALIVGMVKSWSLGDLPTTESALDLPKAVFDELANASLLPEKAESIMFSGGYPRIFDEGIVP
Ga0214242_1034024	Ga0214242_10340242	F044882	NHNNYDATMCQSYLVPTLTVLVKKYTPCQGVVWSQYRLLGTFYVALGFGVVLFAKVCFFLPAQFCKVVDFTLALLYPNFKLQYLMNYSSNFNNFCRFQLLAVCTTLL
Ga0214242_1035446	Ga0214242_10354461	F058633	MASFLDRTLQSYQNNEPITPFIEEALIKADWPEEYPVKVYNKERKFDNMYHPSSDTTAGELQLYYKFHPDWRPLLQEERIGPTLQMTFQVGSAFHSIIQSMLVHLGFTSLDKVEVKFKNEERMIAGAVDV
Ga0214242_1036055	Ga0214242_10360551	F091219	MQDVLRSRCKFVTLLAKYAQQKQVGWEVIFSELGFAGSGARKPRRELEGSAL
Ga0214242_1036140	Ga0214242_10361401	F068380	MAYNSPFTPFGSTYLVGNAAAVQVKTSNNVYPSSYRIVNVTSSLIRVSWQPPEPNDLAVTVT
Ga0214242_1036381	Ga0214242_10363811	F073009	IADQSLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTPRNMSILGWKNRLASKRSIYETYEGSIRWNGMVLYTGQIKIKTANDKSFEGTLYINKGNFNYEIKDLLLNRVDLGMKNFPSDQDAVNYFNWSLTHFYPEVDFSVPEIGNLDFFDPQATNPELMAYNHIFPDGWLHKT
Ga0214242_1037639	Ga0214242_10376391	F078138	MIPAMRNAHATHVDFGFLRGIISSNPNFMPSNIDMVLERKGMFLFGEWKREDEEIKTGQKILLKELAWIHRVLLITGYVDNQPHISLIQQVLPNGNLKVVGKSVADLIKYI
Ga0214242_1038272	Ga0214242_10382721	F096500	VLDTKIDFLFQEPSYIKTSIMSTQQEYIQNLIQNETKLNLEEFFKNIHQKFYSNQDISFMTYFLELTTQEGEFVVHHEKLIEYGVMTTKNSARVKDKLNALDLVEDVDYSLLEDILQQWEGSRGIKHTKVYMLTPEAFKTCLMRARKYPNQIVDPKIYSKYYLLLEKTY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020701: Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences