NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300020700

3300020700: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 hypolimnion



Overview

Basic Information
IMG/M Taxon OID3300020700 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0054262 | Ga0214225
Sample NameFreshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 hypolimnion
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size75507841
Sequencing Scaffolds18
Novel Protein Genes19
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Predicted Viral2
Not Available8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F008860Metagenome326N
F011648Metagenome / Metatranscriptome288Y
F013732Metagenome / Metatranscriptome268Y
F022249Metagenome / Metatranscriptome215Y
F022834Metagenome / Metatranscriptome212Y
F025431Metagenome201N
F025903Metagenome199Y
F027395Metagenome194N
F028046Metagenome193Y
F051875Metagenome / Metatranscriptome143N
F059597Metagenome / Metatranscriptome133N
F063277Metagenome129N
F085790Metagenome / Metatranscriptome111Y
F094772Metagenome105N
F098526Metagenome103N
F100244Metagenome102N
F100246Metagenome102Y
F100258Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214225_1000183All Organisms → cellular organisms → Bacteria17916Open in IMG/M
Ga0214225_1000392All Organisms → cellular organisms → Bacteria10373Open in IMG/M
Ga0214225_1000585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis7861Open in IMG/M
Ga0214225_1000668All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7049Open in IMG/M
Ga0214225_1001377All Organisms → cellular organisms → Bacteria → Proteobacteria4146Open in IMG/M
Ga0214225_1001465All Organisms → Viruses → Predicted Viral3936Open in IMG/M
Ga0214225_1005351All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1434Open in IMG/M
Ga0214225_1006226All Organisms → cellular organisms → Bacteria1290Open in IMG/M
Ga0214225_1006332All Organisms → Viruses → Predicted Viral1273Open in IMG/M
Ga0214225_1006593Not Available1237Open in IMG/M
Ga0214225_1010633Not Available904Open in IMG/M
Ga0214225_1011204Not Available877Open in IMG/M
Ga0214225_1011264All Organisms → cellular organisms → Bacteria874Open in IMG/M
Ga0214225_1017389Not Available681Open in IMG/M
Ga0214225_1020544Not Available622Open in IMG/M
Ga0214225_1022592Not Available591Open in IMG/M
Ga0214225_1024989Not Available562Open in IMG/M
Ga0214225_1026623Not Available542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214225_1000183Ga0214225_100018317F063277MSIVAPFVYSGGMVEPYVSLNEVKFSPTAAIIDFTNLIEDASQAVQDRALYELIVRASSKADNYTMGVYGSLCATSNTENGRYYMNRNGQIVINPYFTPILAVESFSAGWGPGDGLQNIQLSTSNCSIERTQFIITSQSTMGLYFGNLGIVGGNMQSGTEIFCQWSYINGWANTFTNSTSNAGATSITVNNVMGIFPGQNLTIWDGQKDEYVQVATTWTPGNTTLTFTNPLKYAHGSGVNVSALPASVKQAVIHFIVGMIKERGQGGLVLNEIGEPTAVSARTESSVTDEAMAYDLLDDFKQIWGRA
Ga0214225_1000392Ga0214225_10003924F085790MLMPNPPLNSDRARTVFRSFSSFRFLVFAHRLGAGRAG
Ga0214225_1000585Ga0214225_10005859F059597MIVRVDEAARMFVLEGAEVIKRESKKIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPYMQPGIDNSIPQLDILFNSLVIAAQEA
Ga0214225_1000668Ga0214225_10006687F098526MAYSIFTAAETEAFFNSIPDVGVINRQANPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGQFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNLIKGLVRPCQPPKAKRATRAMLQQRLDTLLGVLHGNT
Ga0214225_1001377Ga0214225_10013771F051875TFKIYYRCINMSSTISTLEEVANQFQVWRDNKKNSKFFPIPPHLKAHARQLLTSYSISQVAAALNISRSFLYNIQKDKISLLDNKNQQTSGTESLNFIPFNFVDPNQQKKNHLINPAPPLKFTCEIIKPNGIKLIIHTSDPTSIINTFLCSN
Ga0214225_1001465Ga0214225_100146511F008860MSAFVKSDTRTPVPGDIIFAHSNGWMAKCIRFAERLRWRKGSYWNHACVISRVDQDGTAYVIQAELKGVSEARLDSVGDYVVLEPPHGVNRNKVLAFTKMQVGSKYGILSILSVIFDIISPDWFPSMRMPNTWICSAVTGEALRYGGWLHDWNDIYCITPSQLFNSLVE
Ga0214225_1005351Ga0214225_10053512F011648MSEQDQDFNNFQQHLERIFKDIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK
Ga0214225_1006226Ga0214225_10062261F100244IEHGHLYEITSNSGPLEARKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHTTNVRSPFLVLSI
Ga0214225_1006332Ga0214225_10063321F000324LTYDGATLNIYHANKGEGLPHHVHTFSHATMCHSGSIIVRKEGKEMIVTKETQPINLTANEWHEIEALEDNTVFCNMFSEGKY
Ga0214225_1006593Ga0214225_10065932F027395MSYNIIENTTIQFYTSQPFTSIGGTVVNPDNVKFSYSIQGQTEVSYTWVNPTGDPTGTIKQGSQGTGYFYANISTVRLPGTWSWQWYGYPSSGADTTHTQVAAQGTVVVSASDL
Ga0214225_1010633Ga0214225_10106332F028046MKLKILLLVAGVAVIGSSVTVLVIQSRPRQLKSSPPENQLPAAISNYSKTFKLNTSPPIWGQSTNGKPTH
Ga0214225_1011204Ga0214225_10112042F013732MPAINLPNGASAILYSNSEISERTNRMITRAFMKAAGSASKLTQAGFVEDDPTTWTVFGEMPDEDIENLNGYQAALIVGMVKSWSLGDAPTMETALDLPKAVFDELSTACGEEFNNRLDTSPTIDPKAPIAD
Ga0214225_1011264Ga0214225_10112641F022249MLKRNGEDCEHPVPNYPGLLTASEFKAYNVAVPLVAEEVRLFNERATTLSEIEKQSAGTAEQVMSQVARDLPSLTINGKPESEWKIRHVLIKSARSEMLLCSRDHEGEQQFGVVEKFDPQSPFARVHGDTDLQMTGNNAFVLLHNYVESERSVLQLFRKDIEATVEEKLSEKFPSQNHS
Ga0214225_1012698Ga0214225_10126982F022834PYAFRDKAKAFLNLATTAAETDKRESEINALKQELAKKDEETAKIKAETDAKLAQMQDQMATILAAVGEKKPRAKKVKEAEEV
Ga0214225_1017389Ga0214225_10173891F025431TDDTSSTYHYYGPSLQVVRDDVDVWTTVKVSPQSGTEQIYENTANESRWGYSTLTKSSTVHTTLNLALSTANFLGNLFKTPLPRVGNVELRSETNNGQNMTALLNTEFGDVVTFKRNSPNSSTTGSYPDQQGLISTNMVVESISHDFQAEPGFWHTSFILDPYPIRS
Ga0214225_1020544Ga0214225_10205442F100258MITIEQITKGIQVEMRKVSQYVDDLAVAGDVAAEADADWEITKAKASLLIAAESIEKLTVSEIANRTLIQCEAEYRAYVIAKNRHDNIKHALRAAQSRLDALRTLMTSLRVAGG
Ga0214225_1022592Ga0214225_10225922F025903MIDITEEPNLISFAGNPVIYEACSDNYLISLGTPAHFELVVSSIDSTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVAYIGQTFNDFANNIYQCFLSNYEIQKYFNVTLDPPGTSQRSIKLQAKESGSDGSVVLSNVGVTG
Ga0214225_1024989Ga0214225_10249891F100246VTGVAAGINTPGTDDVYRDYFGILCLIRDTWNNPIGEDIKPSDFIGCARFDISDYIRSKFAAWEMTRFEFPELAGNVRVHGWDYLLKYRVSFAESIAGNVKGLQSTGWNYAIAGGLNHELLTSLNEKYLEYFSIPANKLKFLSWLPLTKYSRSGVMEKLFFLFQDNPSAVHYRLVVIINFTDGSHKV
Ga0214225_1026623Ga0214225_10266232F094772MITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASANYEIAMAKSRMKNSHSDLKMTATMREDQALIENEAMHLRLAIAEASVKACRANVNRIRTQVDITRSISSS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.