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Sample 3300020594
3300020594: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C BE-Lig MG (version 2)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300020594 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191732 | Ga0180219 |
| Sample Name | Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C BE-Lig MG (version 2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 409576163 |
| Sequencing Scaffolds | 0 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Location Information |
| Location | USA: Emeryville, California |
| Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F025544 | Metagenome / Metatranscriptome | 201 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0180219_1039315 | Ga0180219_10393153 | F025544 | VILCESCGGVTDLDLRVKPRDHEASIRVALHDVRCPRCNGHGRPRVVALAAHPST |
