Sample 3300020139

Basic Information
IMG/M Taxon OID	3300020139 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0220148 \| Ga0197143
Sample Name	Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020139 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111485 | Gp0220148 | Ga0197143

Sample Name

Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	297862735
Sequencing Scaffolds	24
Novel Protein Genes	26
Associated Families	17

Dataset Contents

Total Genome Size

297862735

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Bipolaricaulota → unclassified Candidatus Bipolaricaulota → Candidatus Acetothermia bacterium	2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	4

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

Not Available

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Bipolaricaulota → unclassified Candidatus Bipolaricaulota → Candidatus Acetothermia bacterium

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Ecosystem Assignment (GOLD)

Name

Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Nevada
Coordinates	Lat. (^o)	40.6614	Long. (^o)	-119.3661	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Nevada

Coordinates

Lat. (^o)

40.6614

Long. (^o)

-119.3661

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F014385	Metagenome / Metatranscriptome	263	Y
F019254	Metagenome	231	Y
F020180	Metagenome / Metatranscriptome	225	Y
F020182	Metagenome / Metatranscriptome	225	N
F028182	Metagenome / Metatranscriptome	192	N
F029452	Metagenome / Metatranscriptome	188	Y
F032666	Metagenome / Metatranscriptome	179	Y
F036249	Metagenome / Metatranscriptome	170	N
F040122	Metagenome / Metatranscriptome	162	N
F050401	Metagenome / Metatranscriptome	145	N
F063724	Metagenome / Metatranscriptome	129	N
F080678	Metagenome	115	N
F084968	Metagenome / Metatranscriptome	111	N
F087246	Metagenome / Metatranscriptome	110	N
F092114	Metagenome / Metatranscriptome	107	N
F093036	Metagenome / Metatranscriptome	106	N
F098235	Metagenome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0197143_1001531	All Organisms → cellular organisms → Bacteria	19346	Open in IMG/M
Ga0197143_1001885	All Organisms → cellular organisms → Bacteria	16613	Open in IMG/M
Ga0197143_1002057	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	15642	Open in IMG/M
Ga0197143_1003797	Not Available	9842	Open in IMG/M
Ga0197143_1005544	All Organisms → cellular organisms → Bacteria	7250	Open in IMG/M
Ga0197143_1011011	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Bipolaricaulota → unclassified Candidatus Bipolaricaulota → Candidatus Acetothermia bacterium	3972	Open in IMG/M
Ga0197143_1011558	All Organisms → cellular organisms → Bacteria	3795	Open in IMG/M
Ga0197143_1011797	All Organisms → cellular organisms → Bacteria	3716	Open in IMG/M
Ga0197143_1017822	Not Available	2578	Open in IMG/M
Ga0197143_1023857	All Organisms → cellular organisms → Bacteria	1961	Open in IMG/M
Ga0197143_1028236	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
Ga0197143_1028631	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
Ga0197143_1036417	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	1317	Open in IMG/M
Ga0197143_1036531	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	1312	Open in IMG/M
Ga0197143_1036769	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	1303	Open in IMG/M
Ga0197143_1037046	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
Ga0197143_1053101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Bipolaricaulota → unclassified Candidatus Bipolaricaulota → Candidatus Acetothermia bacterium	922	Open in IMG/M
Ga0197143_1054356	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	901	Open in IMG/M
Ga0197143_1054479	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
Ga0197143_1055332	Not Available	887	Open in IMG/M
Ga0197143_1061959	Not Available	801	Open in IMG/M
Ga0197143_1072997	Not Available	692	Open in IMG/M
Ga0197143_1078393	Not Available	649	Open in IMG/M
Ga0197143_1088549	Not Available	583	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0197143_1001531	Ga0197143_10015313	F014385	VKRPSREVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQRTLAEATLAKVRRMLNLE
Ga0197143_1001885	Ga0197143_10018856	F028182	MPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSATPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP
Ga0197143_1002057	Ga0197143_100205713	F029452	MVMAMVYEYRCEQCGNVMLAKRTVDNRDDCPLCAVCNHSTKRVFPPRALIVVPRAFQLECAREAAKCVLPSTPAEKKYWDTFGLEE
Ga0197143_1002057	Ga0197143_100205714	F092114	MARELKSIVASELEKRLGDNPPDRDIWLIKCKRLRELVSNLAPNQVISTSVPEGHSNLLLVNIQIKTHAMLQLLRGTLVDFDGNAELQQEFAKFLQDNEIVLREAILQRLVVGLGAVCVVGDSITGWRLQSISPHDLWWDTQRGNVIQPEWIAREYRDTQGVRYRELWEREKRYIQRVGDTDVRVEPNPIGEIPIVLFPAFYIPDTVYPVGDVELAYPQQAILDEVRRAILNMARRGAGFYSVKRGSIDETELVRLTNPDEVYVLVNEQDAIVPVNTPLPNSEWQALETLAKQDMDALMGVSEYIRGVLPTGRAKFATEVVASVAGQTVRIQTEWYNTKLAIERLARVYYKIKYGNQFGDIVPRVVEDDVSGMLQTDMLQREMGWQVSAGMPRG
Ga0197143_1002057	Ga0197143_100205716	F036249	MQFNPNTSHYASAIGAWLDTNFRDQFTATVAFMEKLKQRGAFKRGSAYLVQPLFSEGNNTVAGVSNFNAPMSIPNDTGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVVANDLFSNTDATLGKIAGIPYAVDRPTTTPNSFGGISRSNTTNPWWRCVVVDANNNPLTLQWLAQAYNLATENGGISPDIIVMPTDLFTAFEAQLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTVFIINSKDLMLVSQTDRPSAEPVEFPDRLVRGYKHGWALALVAKRLNSHARINNITP
Ga0197143_1003797	Ga0197143_10037978	F050401	MKWLTRMFTLPKRYNSLSDIMRDPIGAITNAAQWVVPLAMGLPSGFKALPKLISNPALISKWSLGNAPAFFNLAGQGGKGWNWTAVWNWLKKPENIALVAGGLSYLDQSRRAQRANNQLEQYRNQLAGLSELERMFGTNILQRRLSAVDTVLSPTFAIAQLRAAEDDTAKRLRRMLDTAGVAGMRSVDDTLARTAGELSRQRALIPLQYAQAVMGIPIGGQYTSLVANLLGQQQAQELLALQQLIPALLQLYAYTRGIGTQPPASIASVASVA
Ga0197143_1005544	Ga0197143_10055442	F063724	MPSSWLQRWRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWTDEKEFERTLLAPWHLPSNRWMPVSDQIYLAVASLITMTALVIHYALAKSPVWVGAVGVGVVVLAFFLPMARPMLALHSLAQTLTTETPLHIGVSRLTPAHLVYGALLYGVGRAARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLGASLLAVSVPAPALTAWMHMPLWWWGFVPPLGIVSGLAVEFHPLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE
Ga0197143_1011011	Ga0197143_10110113	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKRKVEDLPLF
Ga0197143_1011558	Ga0197143_10115586	F020180	MNDERVRLWYTARCSCVKPIIYQERDRFPLRCARCGGHLYSAPRPPHFERMARTPIVDFRAILRLLGLGVLAVLGWLLVALMFIVFGGQP
Ga0197143_1011797	Ga0197143_10117975	F019254	MPNERIQEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKRKVE
Ga0197143_1017822	Ga0197143_10178222	F020182	ADDDRIRACVVSMLHARYTACISSVSIAEIVSAVREERLQDAVRMLMQRECMVTVYARRVLRAELDGRIALLAPWDSAPALTRKLHALFGLPAPHEPCRDCPERGGFPS
Ga0197143_1023857	Ga0197143_10238572	F040122	MNAEQLLEFLEQHIDELPQLMGEEEWQAFRAVLHTSVQQMREGISLDELETAVQPISDHLVRCPQVREKLCAFSKSASRRCSQPPDEPQRLSQPPAYNTPSKQQVNQVVNRYRVLAHTHAAAADEKSDASKRHEPDDRRPR
Ga0197143_1028236	Ga0197143_10282364	F087246	MDWETRMDETYELRKALDALEHAQQVMVHHAQGYRQVATLAGLALERIGAVQGSQNWVQLQEALHEVEALLVAIVQQATERGENLMECANGYENAKH
Ga0197143_1028631	Ga0197143_10286314	F014385	LTLEETFPDTSPDWWEEVQLALVRSALEQLSPEEERALWQYADGAKLTPQQRRLAEQAVAKIRQLLNLEP
Ga0197143_1036417	Ga0197143_10364173	F019254	MPNARIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKRKVEDLPLF
Ga0197143_1036531	Ga0197143_10365312	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALVGRASAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKRKVEDLPLF
Ga0197143_1036769	Ga0197143_10367694	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRREKKKVEDLPLF
Ga0197143_1037046	Ga0197143_10370461	F040122	MDAEQLLEFLEQHIDELPHLMGEEAWQAFRAVLHTSVQQMREGISLDALESAVQPIFDHLVRCPQVREKLRAFSESAPQRLSQPPADTTPSEQRVNQVVNRFRVLAHTHAAAADEKSEAPKRPEPADRRPR
Ga0197143_1053101	Ga0197143_10531011	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKR
Ga0197143_1054356	Ga0197143_10543561	F019254	MPNERIQEALSHLRDEWPLRVLLSALAERVAELAALLERAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVEDLPLF
Ga0197143_1054479	Ga0197143_10544791	F032666	MKRVLTLIAATALTASAVMAQTVVRISAYNPFVPTIVGHPNLGPIDQSGAGPFPALQSGVLPGNQDGIYTLFLSVHPDQTWLTGGPNTSSRWSTLSFSITYDSNYIDFVFRDPNNGSDVFVSSLNVGSVFSPYILANAPATGVAAGQVNAKSGSDVTVTFTLAATSNGNGLTSPPEARGYLRDWFKNNFDDELLRVRVNGPAIAALSNQTYSVRPGV
Ga0197143_1055332	Ga0197143_10553321	F098235	MIWGCLVRKGYRNLSIPEELYLELERFFKDSKGRYVSISEIVRVAIREFLDRQKPKTA
Ga0197143_1061959	Ga0197143_10619592	F084968	MAKKWIQKARERMQKRGTVGSFRRAAQRAGMDTCAYADKVLRDPNASKTLKRRALFAKNTGCKHRS
Ga0197143_1072997	Ga0197143_10729971	F093036	GSQSGELVPSLDLYLHIAAELGAHIDATIERIEGGYLYARAVLSYDGGLILNDAVSPLPENADPETLSEIASITQSRAIVRACRLAWGAHIKAYYNPANARNQLLGVAHSLLRALPREQRLQVASNILGAPVNSFADLTAAELAELISALVSETTEPSSQYE
Ga0197143_1078393	Ga0197143_10783931	F014385	VKRPSREVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQHALAEATLAKVRRMLNLE
Ga0197143_1088549	Ga0197143_10885491	F080678	MFARKVNVAITPIAEAYEDWKRIWMGSREIQRFLAYTGLTAPPYNLRVENFLRFPHLRGMTAGRLMQKLRKLGVCWSADSVRRGVLQSVGYKLREIEEFEHNRTFVKKEVGAHV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020139: Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences