NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020131

3300020131: Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C



Overview

Basic Information
IMG/M Taxon OID3300020131 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128792 | Gp0220313 | Ga0196972
Sample NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size187019236
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → FCB group1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSystems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biomedesertsoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001057Metagenome / Metatranscriptome791Y
F002324Metagenome571Y
F004903Metagenome / Metatranscriptome419Y
F007380Metagenome / Metatranscriptome352Y
F010151Metagenome / Metatranscriptome307Y
F013826Metagenome / Metatranscriptome268Y
F024882Metagenome / Metatranscriptome204Y
F030366Metagenome / Metatranscriptome185Y
F035663Metagenome / Metatranscriptome171Y
F039059Metagenome164Y
F044992Metagenome153Y
F048550Metagenome148Y
F048553Metagenome148Y
F050220Metagenome / Metatranscriptome145Y
F053537Metagenome / Metatranscriptome141Y
F054074Metagenome / Metatranscriptome140Y
F058823Metagenome / Metatranscriptome134Y
F072730Metagenome121Y
F073180Metagenome / Metatranscriptome120Y
F074001Metagenome / Metatranscriptome120Y
F075217Metagenome / Metatranscriptome119Y
F087678Metagenome / Metatranscriptome110Y
F097542Metagenome104Y
F104092Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0196972_1008955All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1807Open in IMG/M
Ga0196972_1014253All Organisms → cellular organisms → Bacteria1312Open in IMG/M
Ga0196972_1020320All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1039Open in IMG/M
Ga0196972_1021388All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis1006Open in IMG/M
Ga0196972_1028113All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage852Open in IMG/M
Ga0196972_1031347All Organisms → cellular organisms → Bacteria → FCB group801Open in IMG/M
Ga0196972_1036430All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium736Open in IMG/M
Ga0196972_1037536All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium724Open in IMG/M
Ga0196972_1039837All Organisms → cellular organisms → Bacteria → Acidobacteria701Open in IMG/M
Ga0196972_1045762All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium651Open in IMG/M
Ga0196972_1045775All Organisms → cellular organisms → Bacteria651Open in IMG/M
Ga0196972_1047919All Organisms → cellular organisms → Bacteria635Open in IMG/M
Ga0196972_1048733Not Available630Open in IMG/M
Ga0196972_1049014All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium628Open in IMG/M
Ga0196972_1052601Not Available605Open in IMG/M
Ga0196972_1055192All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium590Open in IMG/M
Ga0196972_1056238All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium584Open in IMG/M
Ga0196972_1061479All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium558Open in IMG/M
Ga0196972_1064689All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium543Open in IMG/M
Ga0196972_1065709Not Available539Open in IMG/M
Ga0196972_1067817All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium530Open in IMG/M
Ga0196972_1068496All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
Ga0196972_1075983Not Available501Open in IMG/M
Ga0196972_1075987All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0196972_1008955Ga0196972_10089552F053537MKYMHKAIWQPDGNLVIRGNTRALLFRALEDVRSQLSGQPQDAEQLQRTLATLQDVLGEYDGPLPSAVELLGDPVKERVSRNLLRV
Ga0196972_1014253Ga0196972_10142532F013826MAVCWRCPRCKEVSCEDDWNAQGRPLACDHCERPFLPQETECPVCDAANPWVRRDSLHFLCRECGNTQTFYGRTA
Ga0196972_1020320Ga0196972_10203201F044992MRREVGSYGEDNNAEAARFDGDDVGLPESPIYSNFSKNLWRTHERHGLVQSPNRSREGTSDHMPTPDES
Ga0196972_1021388Ga0196972_10213882F074001MRGTNPKAIEAARRRTRKVQQELEVASAELVLTQGALHRHLPPAVKQGDVAWAMEQNAAVERKVNQAAEDLEQVQELLTQAGAAPSS
Ga0196972_1028113Ga0196972_10281133F010151AYVEFSDQLPHWDDIIKDPKGTKTPSAPGACVIIVFSAITRIEKSTINPFMDYLERMDAEWQAVFAINVAKSPQKQAVAFNSKKFADWVAKNQDLL
Ga0196972_1031347Ga0196972_10313473F073180MGLMLILLYKILSMKHEFTQLQLTRLVYGETTKAESDMLLELVLTVPHMAASLEALSTAKDALGSVEKGPSDLVMNRIMAYSAATAHVSAS
Ga0196972_1036430Ga0196972_10364301F002324MGEVRLFQICYEGELTVEVSHVMRRLGAEPNFDQSWQVFLPEGRHSAPLVRYLRAQTAPDAKLLVACTQFTTARDFLLVRHSLTPGADYSELHDALERLGTVIPLPFESTFVIQSLYANQMRTDVNTLGLALGELCPDESLMVTGISHDWAYSDSGTSRMFVGDAFEEPVFRSF
Ga0196972_1037536Ga0196972_10375361F048553MIRFTIEERHLTDEDGRPVTAADAVAFHSFDAESVDEAVRLYIRKDDAQLIGNVLKFPGFQAVATVRKASGVYTLQFTPASQGYVL
Ga0196972_1039837Ga0196972_10398371F058823MADTNDSRYKTGNPICDAVRFLCDASFAVLPPDAARQLGEFEKNFWGGVRWFADKNIGWIDDSLAAAERLRDEWRRRHT
Ga0196972_1045762Ga0196972_10457621F007380VTRILFQLLSARLIEPVHEEKSFRPIFLDVEDSPELLKVISTYNDMFGRLFEALERTVGEDQARDIFMTILQNADTDELWAGVFFDQFGRFDENMLIANISELPFEKRKAVLDEGLNTLLSVQLFEVSQHLDQAGKVDVFRFISDQKASLEKATA
Ga0196972_1045775Ga0196972_10457751F048550QARDSVRPLLEAFQYMAASYWQDGAQLFPTKMLANSVEHDRAIAEEVSRTTACDVNARMNELGTDLTSVWRRAFRYRAEREATANALRIREGQPIETKSVCSDGSWSFDGTTLRFSRAIETAAPDRPMPLVLRVKQ
Ga0196972_1047919Ga0196972_10479192F004903MSRYLQKISLRPYSDVEMWTGWDLENRSGEVDGLILADGIPDDVLRATYGVTEFQKIPGEYLEAGEFRPKHG
Ga0196972_1048733Ga0196972_10487332F087678RPEQAGFYWFRYDDLTSQLHFKVLLEVIQMQPRPTEIGGKFLVRWFNRLVPLEQVPDGLWRGPIKDLR
Ga0196972_1049014Ga0196972_10490141F097542KLLHVLGLAGCDLEMKDRAIADALGVTLDATLTDMLAFCRASGKKAGRGEDDAALLMEAIARGGAAGTILLMRTGDVPRDSATIDLIDKVGAVVVADLTRDGFSAALEQAIAEIAADAEVKFEQQAIAKLRQRLGIERMLADKFSKEIPEIRAAISEVERLVTLAGSGGRVTAAMVEREVSAVEGGARYELGSLFTEGKILEAVAKLR
Ga0196972_1052601Ga0196972_10526012F050220METKDILSKLDLIEEQARLTIDALPQLAKERQRMIVALVKQIRWQLTDGELEALADPEATIRLTS
Ga0196972_1055192Ga0196972_10551922F075217MATLPAEGRWSLRLLSDDDFKGALEFLQRDRLINVYLISRLLEERTLAASQIAVVRYNGVIVLVASLATNIVLAGDPSIS
Ga0196972_1056238Ga0196972_10562382F072730MGPTIGRLLQIIGMIILPIGLLYGLVLGEIRTEVKLLALGGFLYLLGWILTRDRNA
Ga0196972_1061479Ga0196972_10614791F039059MTAVATTPQAGLTPQELAMLFQYTVEAYKVFEKLAENLPNPMTRAMFAQFAVDERENRDLIEMKAAAIGARGVRVTLGSDMIFSDILEGEMSYRESAEFLISR
Ga0196972_1064689Ga0196972_10646892F104092MSELQVSEDGRYAGGDVPFGYTLWGDRLVEMPAELDAAVTVIRLVKQGKRYSEIATAVRDQHHVEISQRQFDALMQSVYRRYGPI
Ga0196972_1065709Ga0196972_10657092F001057MKTTVELDASNRIVLSQALRRAAGIPRKQKLTVSATPGRIVLEVPQDSAGRIIKRGKLKIWTGPVPAT
Ga0196972_1067817Ga0196972_10678171F024882MACDHKGGPELIEMAERFLRDRRIDAEPGMKFRWSENLEGGMWASVIVEIERRGDQWIVTRLDRRTEPVTEPGFIELERRRPAG
Ga0196972_1068496Ga0196972_10684961F054074RRAEDLAVQRRRATDDEPSECQFCNGPVPPRAVRCKHCGEVLDENFYRERAQRLRSRMNYASWVMYLFGLGALLVFRPVGVLSIAAGLLLSIAYYAVPVEPPSSPRSKRQTGFMTLIRRQLKMERVAIPIPALRNKKLVFVGTPLVAALIGYSANLFLLQEPVNDILKENAAFEG
Ga0196972_1075983Ga0196972_10759832F035663ALARVTARVQSLTVNQQELTEIHQTLAAVHDTVGSLTFPRCDQDDVYELIDRVESELASAHPNVQIIDTFLNSLARSLRAEPGAREACLRIEGVLERTGLPSTWQAGI
Ga0196972_1075987Ga0196972_10759871F030366MPAETMISVLAVTLLGTGWALWMLPVGTCKECAHCRVERLAKERESEAQVSRIYGIPLCPACGRHHRPEEPHRT

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