Basic Information | |
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IMG/M Taxon OID | 3300020131 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128792 | Gp0220313 | Ga0196972 |
Sample Name | Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 187019236 |
Sequencing Scaffolds | 24 |
Novel Protein Genes | 24 |
Associated Families | 24 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 1 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 10 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
All Organisms → cellular organisms → Bacteria → FCB group | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | desert biome → desert → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | USA: California | |||||||
Coordinates | Lat. (o) | 33.3049 | Long. (o) | -116.2547 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001057 | Metagenome / Metatranscriptome | 791 | Y |
F002324 | Metagenome | 571 | Y |
F004903 | Metagenome / Metatranscriptome | 419 | Y |
F007380 | Metagenome / Metatranscriptome | 352 | Y |
F010151 | Metagenome / Metatranscriptome | 307 | Y |
F013826 | Metagenome / Metatranscriptome | 268 | Y |
F024882 | Metagenome / Metatranscriptome | 204 | Y |
F030366 | Metagenome / Metatranscriptome | 185 | Y |
F035663 | Metagenome / Metatranscriptome | 171 | Y |
F039059 | Metagenome | 164 | Y |
F044992 | Metagenome | 153 | Y |
F048550 | Metagenome | 148 | Y |
F048553 | Metagenome | 148 | Y |
F050220 | Metagenome / Metatranscriptome | 145 | Y |
F053537 | Metagenome / Metatranscriptome | 141 | Y |
F054074 | Metagenome / Metatranscriptome | 140 | Y |
F058823 | Metagenome / Metatranscriptome | 134 | Y |
F072730 | Metagenome | 121 | Y |
F073180 | Metagenome / Metatranscriptome | 120 | Y |
F074001 | Metagenome / Metatranscriptome | 120 | Y |
F075217 | Metagenome / Metatranscriptome | 119 | Y |
F087678 | Metagenome / Metatranscriptome | 110 | Y |
F097542 | Metagenome | 104 | Y |
F104092 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0196972_1008955 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 1807 | Open in IMG/M |
Ga0196972_1014253 | All Organisms → cellular organisms → Bacteria | 1312 | Open in IMG/M |
Ga0196972_1020320 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1039 | Open in IMG/M |
Ga0196972_1021388 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis | 1006 | Open in IMG/M |
Ga0196972_1028113 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 852 | Open in IMG/M |
Ga0196972_1031347 | All Organisms → cellular organisms → Bacteria → FCB group | 801 | Open in IMG/M |
Ga0196972_1036430 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 736 | Open in IMG/M |
Ga0196972_1037536 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 724 | Open in IMG/M |
Ga0196972_1039837 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 701 | Open in IMG/M |
Ga0196972_1045762 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 651 | Open in IMG/M |
Ga0196972_1045775 | All Organisms → cellular organisms → Bacteria | 651 | Open in IMG/M |
Ga0196972_1047919 | All Organisms → cellular organisms → Bacteria | 635 | Open in IMG/M |
Ga0196972_1048733 | Not Available | 630 | Open in IMG/M |
Ga0196972_1049014 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 628 | Open in IMG/M |
Ga0196972_1052601 | Not Available | 605 | Open in IMG/M |
Ga0196972_1055192 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 590 | Open in IMG/M |
Ga0196972_1056238 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 584 | Open in IMG/M |
Ga0196972_1061479 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 558 | Open in IMG/M |
Ga0196972_1064689 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 543 | Open in IMG/M |
Ga0196972_1065709 | Not Available | 539 | Open in IMG/M |
Ga0196972_1067817 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 530 | Open in IMG/M |
Ga0196972_1068496 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 528 | Open in IMG/M |
Ga0196972_1075983 | Not Available | 501 | Open in IMG/M |
Ga0196972_1075987 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 501 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0196972_1008955 | Ga0196972_10089552 | F053537 | MKYMHKAIWQPDGNLVIRGNTRALLFRALEDVRSQLSGQPQDAEQLQRTLATLQDVLGEYDGPLPSAVELLGDPVKERVSRNLLRV |
Ga0196972_1014253 | Ga0196972_10142532 | F013826 | MAVCWRCPRCKEVSCEDDWNAQGRPLACDHCERPFLPQETECPVCDAANPWVRRDSLHFLCRECGNTQTFYGRTA |
Ga0196972_1020320 | Ga0196972_10203201 | F044992 | MRREVGSYGEDNNAEAARFDGDDVGLPESPIYSNFSKNLWRTHERHGLVQSPNRSREGTSDHMPTPDES |
Ga0196972_1021388 | Ga0196972_10213882 | F074001 | MRGTNPKAIEAARRRTRKVQQELEVASAELVLTQGALHRHLPPAVKQGDVAWAMEQNAAVERKVNQAAEDLEQVQELLTQAGAAPSS |
Ga0196972_1028113 | Ga0196972_10281133 | F010151 | AYVEFSDQLPHWDDIIKDPKGTKTPSAPGACVIIVFSAITRIEKSTINPFMDYLERMDAEWQAVFAINVAKSPQKQAVAFNSKKFADWVAKNQDLL |
Ga0196972_1031347 | Ga0196972_10313473 | F073180 | MGLMLILLYKILSMKHEFTQLQLTRLVYGETTKAESDMLLELVLTVPHMAASLEALSTAKDALGSVEKGPSDLVMNRIMAYSAATAHVSAS |
Ga0196972_1036430 | Ga0196972_10364301 | F002324 | MGEVRLFQICYEGELTVEVSHVMRRLGAEPNFDQSWQVFLPEGRHSAPLVRYLRAQTAPDAKLLVACTQFTTARDFLLVRHSLTPGADYSELHDALERLGTVIPLPFESTFVIQSLYANQMRTDVNTLGLALGELCPDESLMVTGISHDWAYSDSGTSRMFVGDAFEEPVFRSF |
Ga0196972_1037536 | Ga0196972_10375361 | F048553 | MIRFTIEERHLTDEDGRPVTAADAVAFHSFDAESVDEAVRLYIRKDDAQLIGNVLKFPGFQAVATVRKASGVYTLQFTPASQGYVL |
Ga0196972_1039837 | Ga0196972_10398371 | F058823 | MADTNDSRYKTGNPICDAVRFLCDASFAVLPPDAARQLGEFEKNFWGGVRWFADKNIGWIDDSLAAAERLRDEWRRRHT |
Ga0196972_1045762 | Ga0196972_10457621 | F007380 | VTRILFQLLSARLIEPVHEEKSFRPIFLDVEDSPELLKVISTYNDMFGRLFEALERTVGEDQARDIFMTILQNADTDELWAGVFFDQFGRFDENMLIANISELPFEKRKAVLDEGLNTLLSVQLFEVSQHLDQAGKVDVFRFISDQKASLEKATA |
Ga0196972_1045775 | Ga0196972_10457751 | F048550 | QARDSVRPLLEAFQYMAASYWQDGAQLFPTKMLANSVEHDRAIAEEVSRTTACDVNARMNELGTDLTSVWRRAFRYRAEREATANALRIREGQPIETKSVCSDGSWSFDGTTLRFSRAIETAAPDRPMPLVLRVKQ |
Ga0196972_1047919 | Ga0196972_10479192 | F004903 | MSRYLQKISLRPYSDVEMWTGWDLENRSGEVDGLILADGIPDDVLRATYGVTEFQKIPGEYLEAGEFRPKHG |
Ga0196972_1048733 | Ga0196972_10487332 | F087678 | RPEQAGFYWFRYDDLTSQLHFKVLLEVIQMQPRPTEIGGKFLVRWFNRLVPLEQVPDGLWRGPIKDLR |
Ga0196972_1049014 | Ga0196972_10490141 | F097542 | KLLHVLGLAGCDLEMKDRAIADALGVTLDATLTDMLAFCRASGKKAGRGEDDAALLMEAIARGGAAGTILLMRTGDVPRDSATIDLIDKVGAVVVADLTRDGFSAALEQAIAEIAADAEVKFEQQAIAKLRQRLGIERMLADKFSKEIPEIRAAISEVERLVTLAGSGGRVTAAMVEREVSAVEGGARYELGSLFTEGKILEAVAKLR |
Ga0196972_1052601 | Ga0196972_10526012 | F050220 | METKDILSKLDLIEEQARLTIDALPQLAKERQRMIVALVKQIRWQLTDGELEALADPEATIRLTS |
Ga0196972_1055192 | Ga0196972_10551922 | F075217 | MATLPAEGRWSLRLLSDDDFKGALEFLQRDRLINVYLISRLLEERTLAASQIAVVRYNGVIVLVASLATNIVLAGDPSIS |
Ga0196972_1056238 | Ga0196972_10562382 | F072730 | MGPTIGRLLQIIGMIILPIGLLYGLVLGEIRTEVKLLALGGFLYLLGWILTRDRNA |
Ga0196972_1061479 | Ga0196972_10614791 | F039059 | MTAVATTPQAGLTPQELAMLFQYTVEAYKVFEKLAENLPNPMTRAMFAQFAVDERENRDLIEMKAAAIGARGVRVTLGSDMIFSDILEGEMSYRESAEFLISR |
Ga0196972_1064689 | Ga0196972_10646892 | F104092 | MSELQVSEDGRYAGGDVPFGYTLWGDRLVEMPAELDAAVTVIRLVKQGKRYSEIATAVRDQHHVEISQRQFDALMQSVYRRYGPI |
Ga0196972_1065709 | Ga0196972_10657092 | F001057 | MKTTVELDASNRIVLSQALRRAAGIPRKQKLTVSATPGRIVLEVPQDSAGRIIKRGKLKIWTGPVPAT |
Ga0196972_1067817 | Ga0196972_10678171 | F024882 | MACDHKGGPELIEMAERFLRDRRIDAEPGMKFRWSENLEGGMWASVIVEIERRGDQWIVTRLDRRTEPVTEPGFIELERRRPAG |
Ga0196972_1068496 | Ga0196972_10684961 | F054074 | RRAEDLAVQRRRATDDEPSECQFCNGPVPPRAVRCKHCGEVLDENFYRERAQRLRSRMNYASWVMYLFGLGALLVFRPVGVLSIAAGLLLSIAYYAVPVEPPSSPRSKRQTGFMTLIRRQLKMERVAIPIPALRNKKLVFVGTPLVAALIGYSANLFLLQEPVNDILKENAAFEG |
Ga0196972_1075983 | Ga0196972_10759832 | F035663 | ALARVTARVQSLTVNQQELTEIHQTLAAVHDTVGSLTFPRCDQDDVYELIDRVESELASAHPNVQIIDTFLNSLARSLRAEPGAREACLRIEGVLERTGLPSTWQAGI |
Ga0196972_1075987 | Ga0196972_10759871 | F030366 | MPAETMISVLAVTLLGTGWALWMLPVGTCKECAHCRVERLAKERESEAQVSRIYGIPLCPACGRHHRPEEPHRT |
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