NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019758

3300019758: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_2_MG



Overview

Basic Information
IMG/M Taxon OID3300019758 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217617 | Ga0193951
Sample NameMicrobial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_2_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size288452110
Sequencing Scaffolds4
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
Not Available1
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021441Metagenome / Metatranscriptome219Y
F024918Metagenome / Metatranscriptome204Y
F040603Metagenome / Metatranscriptome161N
F051181Metagenome / Metatranscriptome144N
F083435Metagenome / Metatranscriptome113Y
F092061Metagenome107Y
F099388Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193951_1009243All Organisms → Viruses → Predicted Viral3505Open in IMG/M
Ga0193951_1038888All Organisms → Viruses → Predicted Viral1210Open in IMG/M
Ga0193951_1077328Not Available770Open in IMG/M
Ga0193951_1128307All Organisms → Viruses569Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193951_1009243Ga0193951_10092431F040603MWTHEAQLQLCGSTNMMYYTKHKTLADTSETSLFTVPSGYVLWINYIFIANHGNSTNNVSCWWEDGAGVDQLYFLDNNSLQSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNGS
Ga0193951_1038888Ga0193951_10388881F051181MDDLLEQAQENISENVDKQEKEKLYLVLQESLNELSGLEELNKTYKELRDKAIKDLYNVGISAQSLAKTTELTRQMIHRIVK
Ga0193951_1070246Ga0193951_10702463F083435SSKLKKYRFGTIRSAYSRLPRFWYGWLGRGTLDDLTNEEYEQYLKNKDNRGSIQKAKRRNSKIRWEYRQERLKNRFIQLLAKLGIKITGVNKGDKGDDLYEEFKKFSKK
Ga0193951_1077328Ga0193951_10773282F092061MNKKETSEAIIKFFVESYTAPTKEKREYANWCAYRACSGLYPEEVRYFQREAVSRLHYKHWRRVKQEATA
Ga0193951_1122210Ga0193951_11222101F099388LEDLVKKEGFVKEGNQYILKPDTPTNVVGNEFVDNILNANTQLVNNLPLSETVKNQFDNVVRNRAKNLATPGGVIDAVDVWEMGVLGLMIAAIAYKEYDEIPTIFKRTATNMFNSMTSMYNIPPVPLEQYDLDYEFIEKVITTGEKVMPTDIIIKKVGEIAKGVGEKGLATGFGYVPTTPKNTDTMETTQKIQPG
Ga0193951_1128307Ga0193951_11283071F024918RSVNPLIRIANTLEEILRLVKKDQEETRARFEERWDKEDNEKN
Ga0193951_1128307Ga0193951_11283072F021441MKKIKHNDLVPWFIQDHGTLPASYLKSCRSFFDSIKLQASSIKPQASNQKNLHKPGTRVKNRFNRKI
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