NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019728

3300019728: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_2-3_MG



Overview

Basic Information
IMG/M Taxon OID3300019728 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217662 | Ga0193996
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_2-3_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size115884482
Sequencing Scaffolds26
Novel Protein Genes32
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
Not Available13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_311
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Tateyamaria → unclassified Tateyamaria → Tateyamaria sp. Alg231-491
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001166Metagenome / Metatranscriptome760Y
F005815Metagenome / Metatranscriptome389Y
F010948Metagenome / Metatranscriptome297Y
F018550Metagenome / Metatranscriptome234Y
F024202Metagenome207Y
F026280Metagenome / Metatranscriptome198Y
F026445Metagenome / Metatranscriptome198Y
F032659Metagenome / Metatranscriptome179Y
F034003Metagenome176Y
F037736Metagenome / Metatranscriptome167Y
F039145Metagenome / Metatranscriptome164Y
F042909Metagenome157Y
F047064Metagenome / Metatranscriptome150Y
F058634Metagenome / Metatranscriptome134Y
F062772Metagenome130Y
F063840Metagenome / Metatranscriptome129Y
F064729Metagenome128Y
F070129Metagenome123N
F071910Metagenome121Y
F074892Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F082520Metagenome / Metatranscriptome113N
F082775Metagenome / Metatranscriptome113Y
F083435Metagenome / Metatranscriptome113Y
F087210Metagenome / Metatranscriptome110Y
F101181Metagenome102Y
F105203Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193996_1007104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1176Open in IMG/M
Ga0193996_1007780Not Available1137Open in IMG/M
Ga0193996_1008367All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini1106Open in IMG/M
Ga0193996_1009626Not Available1047Open in IMG/M
Ga0193996_1012326All Organisms → cellular organisms → Bacteria → Proteobacteria950Open in IMG/M
Ga0193996_1014030All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium904Open in IMG/M
Ga0193996_1024754Not Available727Open in IMG/M
Ga0193996_1026007All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria713Open in IMG/M
Ga0193996_1026034All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria713Open in IMG/M
Ga0193996_1026136All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_31712Open in IMG/M
Ga0193996_1028986All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont685Open in IMG/M
Ga0193996_1029109All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria684Open in IMG/M
Ga0193996_1030086All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae675Open in IMG/M
Ga0193996_1035682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Tateyamaria → unclassified Tateyamaria → Tateyamaria sp. Alg231-49634Open in IMG/M
Ga0193996_1039735Not Available610Open in IMG/M
Ga0193996_1040050Not Available608Open in IMG/M
Ga0193996_1040468Not Available606Open in IMG/M
Ga0193996_1040627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium605Open in IMG/M
Ga0193996_1043313All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium592Open in IMG/M
Ga0193996_1046166Not Available578Open in IMG/M
Ga0193996_1052097Not Available554Open in IMG/M
Ga0193996_1054356Not Available546Open in IMG/M
Ga0193996_1057509Not Available535Open in IMG/M
Ga0193996_1059322Not Available529Open in IMG/M
Ga0193996_1063708Not Available516Open in IMG/M
Ga0193996_1066795Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193996_1002833Ga0193996_10028332F076890MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESAPGTSITLYTTPAAHPMPMGLDESRCARMDWKTYTLAVDPDEWNAFWQDDRNSPFEIGIAFLEDFHPLPLSAFGAVILDTGSADYLVSCGCFWR
Ga0193996_1004373Ga0193996_10043734F087210MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLG
Ga0193996_1007104Ga0193996_10071041F026445ALIRRVETADSINWGCLATGHEAGCPRQLHFTHHDSYSRWVKHFNGTQSVVVIHRVRCLDCGAVFSVQPSFLIRYKRYDTDATEKLMTLLFITEDSYRMAGVSQTLALDDQQAGTWAALEIHQAHAIQPLALWRLVQWLGQLSPAQLNLALGVEPPQIIIEDEKHATECGQKSYIPLVYAPKEALIWWVDYLHSVSEADLTASLERFKAISDRLVDIIGATVDGWEAAQNALQATFEGITLVECHFHALLKLGQHLATYKRQRKQAGQPLSETEEIAIRAAFWRVLKATTPEQYQQALDQLPEAFEQEPLASRKQSLIEKQALFLAWTTDQRLAVVTTALDQCMKFLDRKLENMQTFHSAKSGLATVNAWAITRNCWRFLKGAKRAGLSPL
Ga0193996_1007780Ga0193996_10077802F005815MTMKVTRLTTYWTIDEAATAIEFLDILRDALWETYGAHITEMHREAYDNRFQDINQCELGFDDDLPF
Ga0193996_1008367Ga0193996_10083671F062772GQRHSALCIRFLYHERLSTFVRRNRMNLNGIWSSELGGAYGWEPIGTFFLKDGHLTGGGRNHFSLGTYKTKGDSAVFHIVINQFGKKRALFGQKSEQVRVVVKGKRNDDKIIGEATLPGHVEYGICVRFQRRADLPEEKTH
Ga0193996_1008367Ga0193996_10083672F062772MSLNGIWSCELGGAYGWEAIGTLFLKDGHLQGCGRNHYTLGRYKVKGDGAVFHMELTQYGKKRTLFGHKSEQVCVTVKAKRDGDKIIGEATLPGHKQYGIFVRFQRRADLPEEKTH
Ga0193996_1009626Ga0193996_10096261F070129MQIDMTTEALLCAIKSDVRQRVDDIVDGAEHAAMSLNSEQQVEQLLEVALVRVEEAIAEAARAMAREIHRDWHE
Ga0193996_1012326Ga0193996_10123261F082775EGSVMNEPDILYPAIFVFSMLLIGLVLTMWEFSRLQKRKQQMHEEGGHVANREFHASRDNVPNVSRL
Ga0193996_1014030Ga0193996_10140303F010948MEWVLLGTIVTIIIVGCWLAKSTQDYIDEQNERYRKERDND
Ga0193996_1019504Ga0193996_10195041F083435QFLKNKDNKDSIRARRRDSKIRWEYRQERLKKRFIQLLAKFGIKITDVNSGDNGDDLYEEFKKFTKK
Ga0193996_1024754Ga0193996_10247541F034003MKKRRKRNSTNNKPNQLSFDFNLNIPFELHTPKSEISSLQKRKIDWDRRPIIELVKG
Ga0193996_1026007Ga0193996_10260071F058634MSLTRFTGSVLLTCTAMAVAVTGCGSDQSQSAEGIGSVDMTVTLAQPPSGPNEQIDTVDVSLYCDGVDPVLGVPRPPQSSPETFSINVATSQGPEPYNTIGLLEKQGLPAGNCHFSFAAVSNTGNTQCTGELTVAIATNETTQSEVVLACIHTPRYGGVRTDGTFNQCAEYRQILVTPTTQAIGNLVDVRTEVYDPDGDPVTVGVQAVGACDNVQYVNGDTAASCEAVSG
Ga0193996_1026034Ga0193996_10260341F005815MTMKVTRLTTYWTIDEAATAIDFLDRLRDALWETYGEQIIKMHREAYDNRFQDINQCELGFDDDIPF
Ga0193996_1026136Ga0193996_10261361F074892AVIALFGLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIRERVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALWIEDARSGEVFVDRR
Ga0193996_1028986Ga0193996_10289862F037736LDVLQILWLLANPLWTHDIGESGSKTFTGWLLMGAADANHIWWLNINPPQTDLLLHLNSYRIRHLPFDFLTASEF
Ga0193996_1029109Ga0193996_10291091F005815MTMNVTRLTTYWSIDEAATVIEFLDILRDALWETYGEQITEMHREAYDNRFQDINQCELGFDDDIP
Ga0193996_1030086Ga0193996_10300861F063840MGGYELLDQLSEQFFRPAGGYFANFSSSGGSTSEEIYFQQAVYFSYTWFLPRAL
Ga0193996_1035682Ga0193996_10356821F101181MGMDDTNHVKLIVLVCVIAVLVVGISIGGPKFINTVQMHFGSKGKIELMERCIEMPGCTIGPEDLDFYERYHAIRESDAAQKIKESDTVEQLLEE
Ga0193996_1039735Ga0193996_10397352F039145MKKILISLLVLLPMLAGCGQEGVKAPVELSGFIEELKANGVDGTLILRAPINEDMEYVAEYTIAKYSSTRIISLFKCKDAEKAEANLQEALKNHKLSGQASNGTFIMAATFYPPDEEAVEKIKAIFLAYEFEQ
Ga0193996_1040050Ga0193996_10400501F071910MRPIVVAALIAALLGAFGLALGRSAANAVERAVERHVVGVESALSL
Ga0193996_1040468Ga0193996_10404681F071910MRRIVFAALVVALLGALGLALGLSAADAVNRAVEQRTASVERALSL
Ga0193996_1040627Ga0193996_10406272F018550NSLKRLYDAHAPMQSPVLCVSPKQLLDLNKELLAGNVGITGAILPRDRSIAGIDIDTIVTPFGSIGLMVIDPNIIPANTAFILDFAFIQPVFTNIPGYGTVFVRDIDQDDYARVSKAIYMEMGYDFGPPSYHLKITDVA
Ga0193996_1043313Ga0193996_10433131F070129GLPIESRGELMKGAEAMQYSESTEALLHAIKNDVRSRVDDIVDYAEHAAMTLTSENEVDAVLERALLEVEKTLAEAARAMAREIHRERMY
Ga0193996_1046166Ga0193996_10461661F024202MTKTITYNNKEYKLPFDVALPDNPTAEVEIANRFSGEKT
Ga0193996_1052097Ga0193996_10520971F105203MQQAKHAEQMVNRFRELVEESGDSLSVNHYNELKLIIEAGLDTALLENMARISERLTVLAHDIQHNAD
Ga0193996_1054356Ga0193996_10543561F001166MATELGDNVQVKANLAFMAKVIAIVGTCVWGYSVVWNKLMVLDSSLDRVQHEGTLLGDLSARMMHIEKFAEQSKADLNHLLEMQDAPITSDHQQFERIRYLEKELDRMRDKLENHLTK
Ga0193996_1054356Ga0193996_10543562F082520MGELLMLFITGGGSTAMGAILKGVFGYIFEAKQNKHDLE
Ga0193996_1057509Ga0193996_10575092F042909MVELLNFIGSLNLWTFIVIWTSTIFLVISISLLLFSVSQMNKETIKISQKVKILIEGLSEKKINA
Ga0193996_1059322Ga0193996_10593222F064729WGGRRAMGDLKEWLKYWRKVISKCSKIHKDSKIHKKAYAELSGYLNSVEECANVGELDATALWAVRFMQRMHELEKEIGLHVLEKRVHSTHKE
Ga0193996_1063708Ga0193996_10637081F032659VLDRWWRRWESKTADFDANQATTGNHRKPDPEPSESKHEEKQFRETVLPSGKIEHETTQGRADVGDVPTAETLGSLARKVLSSSRHAESRELARAVLRLLTPLKKQS
Ga0193996_1066025Ga0193996_10660251F026280MGASFVIALCLFINGQLVEHRIQNSISDCLKHKREAERNIGMDNKKFM
Ga0193996_1066795Ga0193996_10667951F047064METIEIKTVKSWKRDVIKYFEDLEIICNDYNRMFLRYLGKLNRLLHEERIDQTEYDDLKKTLLKASESINNVPRTIQDLK
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