NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019698

3300019698: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_2-3_MG



Overview

Basic Information
IMG/M Taxon OID3300019698 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217652 | Ga0193986
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_2-3_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69674590
Sequencing Scaffolds25
Novel Protein Genes29
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F004928Metagenome / Metatranscriptome418Y
F005351Metagenome / Metatranscriptome403Y
F005815Metagenome / Metatranscriptome389Y
F006847Metagenome / Metatranscriptome363N
F009959Metagenome / Metatranscriptome310Y
F010065Metagenome309Y
F012917Metagenome / Metatranscriptome276Y
F014037Metagenome / Metatranscriptome266Y
F023596Metagenome209Y
F025177Metagenome / Metatranscriptome203Y
F041807Metagenome / Metatranscriptome159N
F045766Metagenome152Y
F047685Metagenome149Y
F063710Metagenome129Y
F064767Metagenome / Metatranscriptome128N
F070125Metagenome / Metatranscriptome123N
F073262Metagenome120Y
F074892Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F081351Metagenome114N
F085725Metagenome111Y
F089490Metagenome / Metatranscriptome109Y
F090406Metagenome108N
F095003Metagenome105Y
F099324Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193986_1000032All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter4026Open in IMG/M
Ga0193986_1001351All Organisms → cellular organisms → Bacteria1421Open in IMG/M
Ga0193986_1002964All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1102Open in IMG/M
Ga0193986_1003450All Organisms → cellular organisms → Bacteria → Proteobacteria1050Open in IMG/M
Ga0193986_1004018All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1000Open in IMG/M
Ga0193986_1004773All Organisms → cellular organisms → Bacteria945Open in IMG/M
Ga0193986_1008138All Organisms → cellular organisms → Bacteria795Open in IMG/M
Ga0193986_1010192Not Available742Open in IMG/M
Ga0193986_1012403Not Available697Open in IMG/M
Ga0193986_1017463All Organisms → cellular organisms → Bacteria626Open in IMG/M
Ga0193986_1018002Not Available621Open in IMG/M
Ga0193986_1018315Not Available617Open in IMG/M
Ga0193986_1018568Not Available615Open in IMG/M
Ga0193986_1018646All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis614Open in IMG/M
Ga0193986_1021711All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium585Open in IMG/M
Ga0193986_1022295Not Available581Open in IMG/M
Ga0193986_1026998All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon548Open in IMG/M
Ga0193986_1027455All Organisms → cellular organisms → Bacteria545Open in IMG/M
Ga0193986_1030017Not Available531Open in IMG/M
Ga0193986_1030086Not Available531Open in IMG/M
Ga0193986_1030536All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium529Open in IMG/M
Ga0193986_1031423Not Available524Open in IMG/M
Ga0193986_1031656Not Available523Open in IMG/M
Ga0193986_1033821All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
Ga0193986_1035059Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193986_1000032Ga0193986_10000324F099324MFKQIIFVIMLGWVLVLSGCAAIDKGHNIEGEDYRGGYPPRGGYTRTSQHKALVSEACNIEANNLAGDKDFMADDRARRVYFSQCMQRNGYNAAGNYVGIPPK
Ga0193986_1000241Ga0193986_10002412F076890MVVNRTVTTLLMAALGPGLSACSTPGFEEYCRYSDEYSIREADPQSLALVLGVRRGLAMEAPFVVVRSLSEHNRGAALKLHATAEPHPMPVSLDESRCAAVDWNTYTLTVDEEEWSAFWSDDRNAPFEIAIAFLDNNESLLVSKFGAAIVDTAASDYLVSCGCYWK
Ga0193986_1001351Ga0193986_10013514F070125VTTAEQRRQWIEALHAYRDDSERLFGLVASLANLLDRTLVVETMESVLGITAVHDGDCVIFDDLAIRFGSDDRVKSVFRTIGGSGS
Ga0193986_1002846Ga0193986_10028462F076890MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARMDWKTYTLAVDPDEWNAFWQDDRNSPFEIGIAFLEDFHPLPLSAFGAAILDTGSADPLVSCGCFWR
Ga0193986_1002964Ga0193986_10029641F081351MVDDERSNLAGLRRKAAEKTPYPYFLERLEDIEAWLKAGFSVRSVWRIYSDKSVPFPGSYRSFLRYCQEHCESASAPRRKAPNAPEATPGRAVSVLGQGKRYPPPRTRPPGLAPEQIQSMMDPDRDLGPKR
Ga0193986_1003325Ga0193986_10033251F000200MIKVYDFRCDNGHVYEQFVDSGTEMSRCKCGASATKMLSAPAFILDGHTGDFPGRHMKWVKEHEQAGRSNSSP
Ga0193986_1003450Ga0193986_10034502F005815MTMNVTRLTTYWTIDEAATAIDFLDILRDALWETYGEQITDMHREAYDNRFQDINQCELGFDDDLPF
Ga0193986_1004018Ga0193986_10040182F074892MAFMMKKYAVIALFGLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIRERVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALWIEDARSGEVFVDRR
Ga0193986_1004773Ga0193986_10047731F063710MNKPRQRSLRVRVDYEPNRFSGDCLERIYEQLHPTKSREVTPDKDNKP
Ga0193986_1008138Ga0193986_10081383F012917LKFLRFPLNDCGYYDKYSSFGEINQVWDKKKHLRRKRWSQE
Ga0193986_1010192Ga0193986_10101921F014037DELSAASNFGRKWGWYQSLYALAQGDIGRFEDITKLNAHQCLYALSFMKDKAELEARQIKSKFNG
Ga0193986_1012403Ga0193986_10124031F073262ATQLLAPQSTTNTIGTNLNASLNRPKALATLQDKCPMLVATLLAACEVAAATAPPLHWSKVHATLKPAEWAAYHARALDTAGSEIDKPVPLIPPPMASDLGNGRFTASSTHNPNEGMSAFRIRPSCMPSRQEHQDCNRTFEVLVQGMGAASFEAQQMALIDNEFELPQSAEEFRGCINGYQVLLRAFLGVHSRLCVAHEALAKEVDCITTTVVNVHLDEKVRQQIFMLILAW
Ga0193986_1017463Ga0193986_10174631F041807MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKSILLSVQFKHFYYV
Ga0193986_1018002Ga0193986_10180022F085725MNLILTTALLLISAVAVGFYLLFLGLRQRKRSPGLGFTHAGLALSGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENKPPSMVAVTVHAIMGLFGISLLIINLF
Ga0193986_1018315Ga0193986_10183152F089490MYHLMKSTKFTLDHLVSGLMSLYRQTEIGHFQQFRAALGACEIANNKGRSRFYVLNESGQEYYDGTWID
Ga0193986_1018568Ga0193986_10185681F005351STWSWAKAFAEVEKTIRQAEYEQQVMNHIDDYSGNPKWVLFTEEQCDDHYEILWQIL
Ga0193986_1018568Ga0193986_10185682F009959MANTMTEEEVIDKICDRIVTVLYNELDYYMFEELGFTETDDEYVEKADEYIVKIIKNLNK
Ga0193986_1018646Ga0193986_10186462F090406MKFERNVLWWIIVLVGLTSCSTTLTSVDGKGGNVYALPPTVVDQILKDAMSAEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193986_1021711Ga0193986_10217112F004928MGQVIQSILAEPENTVEIVVHITETLGEQRRGDLVAGLEDNGGITAAEFCPLRYHLMLVRYDRDIYSSQDVLDRVRAQNVDARLIGPV
Ga0193986_1022295Ga0193986_10222951F095003MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLSVDGDKA
Ga0193986_1026998Ga0193986_10269981F010065GLRRAIVRGESGISFTGLYICGVISLVMLVLKLSVMDAWSWWRVVLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNVVRWIDGSETSYWFWLMSGKVEVLAAFGALSVLALFSYWSRLARVLKASG
Ga0193986_1027455Ga0193986_10274551F006847TAMGAILKGVFGYVFEAKQQKHDLEMAREARASDNFLRLQAEIAKSGTGEFVSFTRRILAVIGVSTLCACIILCTLFPSAEIVTLTNADGEGVNEFLFGLISFQANQTPISISSGHISLMGCTVILPCILGFYFGPSGRRG
Ga0193986_1030017Ga0193986_10300171F023596MTNKSLQTLLFFGAVVIALLFAKLMFDMSRSMSEMTGYVGAMSEDVREMQNSMRTMNDSMLRMEQSIHSLGQAFNQGSKQFQQMNPAGMMQQVLPDSGQRTR
Ga0193986_1030086Ga0193986_10300861F047685MIMTDEQIRMLVNLGRDEARLLLENGERALYKRIRREIVKLVREYEVKLPLTCLQFFYCRNRQSG
Ga0193986_1030536Ga0193986_10305361F023596MASKSLQALLFVCAGVIALLFVALMFNMSRSMSEMTTYVGAISQDVSEMQNSIHTMNESMMRMERSIHGLGQAFSQGSKQFQQMNPAGMMQQVLPGSGQR
Ga0193986_1031423Ga0193986_10314232F063710RVDYEPNRFSGDCLERIYEQLHPTKSREVTPDKNNKQGEVEPQKGKGGRP
Ga0193986_1031656Ga0193986_10316562F025177EMREEAHAILRALNKIGDALDAAIAAEVILDRKQRN
Ga0193986_1033821Ga0193986_10338212F045766MQTEDEQQKIQADLEIVIGRMQAIQRAIKASGQPASMLELVELKDLGVKYARLVEQM
Ga0193986_1035059Ga0193986_10350591F064767MQLFHQYQSLSGELSMDIDEYVIAVRAADSMSRAWRSDVAILSNLKIVRLENARGTILEIVRWDL
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