NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019087

3300019087: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000402 (ERX1782238-ERR1711947)



Overview

Basic Information
IMG/M Taxon OID3300019087 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0216988 | Ga0193161
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000402 (ERX1782238-ERR1711947)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size30914815
Sequencing Scaffolds8
Novel Protein Genes17
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Eukaryota6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMediterranean Sea: TARA_025
CoordinatesLat. (o)39.2143Long. (o)19.406Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000021Metagenome / Metatranscriptome6082Y
F000048Metagenome / Metatranscriptome3365Y
F000073Metagenome / Metatranscriptome2639Y
F000287Metatranscriptome1370Y
F000809Metagenome / Metatranscriptome882Y
F001255Metatranscriptome736N
F003503Metatranscriptome482N
F005202Metatranscriptome408N
F032301Metagenome / Metatranscriptome180N
F064419Metatranscriptome128N
F088751Metagenome / Metatranscriptome109N
F089813Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193161_1000472Not Available1300Open in IMG/M
Ga0193161_1001876All Organisms → cellular organisms → Eukaryota848Open in IMG/M
Ga0193161_1002932All Organisms → cellular organisms → Eukaryota728Open in IMG/M
Ga0193161_1003178All Organisms → cellular organisms → Eukaryota707Open in IMG/M
Ga0193161_1004071All Organisms → cellular organisms → Eukaryota647Open in IMG/M
Ga0193161_1006106All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis559Open in IMG/M
Ga0193161_1007271All Organisms → cellular organisms → Eukaryota524Open in IMG/M
Ga0193161_1007832All Organisms → cellular organisms → Eukaryota510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193161_1000472Ga0193161_10004721F088751MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKMLVPSYRDSNETPFSCXKHXSVRLQLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHXRVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRQLFSLNNFFRSWPEHG
Ga0193161_1001876Ga0193161_10018761F089813TRPTTAFTVKMQTGQERMVLVEVMPDRVVSLLGGLVTVQWSRGIVTVDTPAHRVIYNGKVMDVLDKAILASGDHCGLCGDHNRMKQADIKSSSQCVHTSLVSMAQSFRVNSAIEQCTPLPAAAIERLSKEKTMCVRPSSPLQISYFTPATEAKVLQHAVLHRAGQVCFSKTMLPECAIGFMASETLVKEAGFVCLPAAAPETKDILRRVHLGQECTELTTMPVTFTTRVHVAKECRRQ
Ga0193161_1002662Ga0193161_10026621F000021FQINASFEGLVETVPGVNLDLLKMDKYTMDPAKDPLFRGEFPVVLALLEKLKGGKEAKNECDKVIDKNGTPKTGGNGIKQLRENIAESKLSYEIMDDAAQAFLKVKIMDNIHKYYYLIVFTAYMREMAEVARTTMTDEQKAALTLPGGKTAIPGNQLKLPRTFAAFMEEHSDLRGLIDSGKGDLQWERDIPAAALANLEKLAAGDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRIL
Ga0193161_1002873Ga0193161_10028731F000048NEKVTTFDKTCLTYAKVLDAANGAAQKMTTHGEADAEVAALKERYNKVKAVSDEWVKKVDVLLKEWTLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVEGL
Ga0193161_1002932Ga0193161_10029321F003503FFSPIEVDLACTAGSPLGAKLASAFETCLGGEEALKPEEVGVSERRRRRPNKGRKCPTVEQIKAKMGEGMEGDWCVLSQLGWIDENGNEKNETTAADLMSLNAEVLAELDESAMATCAQERVEMIGKMMEKKHKRCAKKFSEEDKAELTEMALKIQGYNCFKEMFHSACQKSVKNQIYAFFQAQAMAAASTDSPTTSAQATTV
Ga0193161_1003178Ga0193161_10031781F032301LSPQQADGFFYQGDMKIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCSKKPYGHNFQISALKLNQP
Ga0193161_1003756Ga0193161_10037562F000021IVFTAYMREMAEVARTTMTDEQKAALTLPGGKTAIPGNQLKLPRTFVDFMGEHAELRGLIDSGKGDLQWERDIPAAALANLEKLASGDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPAPVKAEVESLIEKKAITLDLYEILGKCTWKPV
Ga0193161_1003759Ga0193161_10037591F000809MGSYCVTGDSISPAKMGDHIMLDLEEWALVLSKMLRFHFNISEDIKKIVQTIRVEMKPELIPLAEEKSNFGKVVKKAIREMWALEYEVDELQTKFAESIGTMDLDNLDVDFIEDMMLKAKPLQSVLNCIRNRQIAKLEEVKKLYADQIKDLEAMKVTRPAKPVAAEKAAEPAAAPAPAPETAKA
Ga0193161_1003792Ga0193161_10037921F000073RGKSAIPGNQLKLGKTFVTFMEAQPELRGLIESGKGNLQWERDIPAAALANLESLANSDFKANLGKIIHDIYQTAHQMFSDMPQGDHKKRAKYRFASKTLMRILPSSVKGEIEGLIEKKAISLDLYEILGKCTWKPV
Ga0193161_1003804Ga0193161_10038041F000021IVFTAYMREMAEVARTTMTDEQKAALTLPGGKTAIPGNQLKLPRTFVDFMGEHAELRGLIDSGKGDLQWERDIPAAALANLEKLASGDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPAPVKGEVESLIEKKTITLDLYEILGKCTWKPV
Ga0193161_1004071Ga0193161_10040711F005202HGMRELNVLDASNNIDVQAMKRDIQKYTMPSEWFKNKYEHLLDTCYEMATNLPAEIAENSVITGETFGTVKLGEVKMFSKCCEKAKMKLCMHQDIKNKVESNFGPMEDILQETQLTEHEFFPLVMQLLHGKEMDYMTGGM
Ga0193161_1004364Ga0193161_10043641F000021EMAEAARTTMTDEQKAAFTISGGKTAIPGNQLKLPRTFVDFMGEHSELRGLIDSGKGDLQWERDIPAAALANLEKLASGDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPAPVKAEVEGLIEKKTITLDLYEILGKCTWKPV
Ga0193161_1004480Ga0193161_10044801F000048IKEFSPWLAECEKSITSGLSKPSDLSEVKALNDKVTTYDKTCLNYIKVLEAAEAASKKMTTHAEADAEVAALKERYQKVKKVSEEWVKKVDTLMKEWVLLDNTVTELNSWVAKDKTSEGENQFSLEKMESTLGELKNIFKAKEKLVEGL
Ga0193161_1005717Ga0193161_10057171F000048KVLTSAQGAAQKMTTHAEADAEVAGLKTRFDAVKVVSDTWVKKCDVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0193161_1006106Ga0193161_10061061F000287KVYDYNQEFGGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLIDAHKTQIKELNGTTAMARVNLMKNIVTSRRQPHTPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIVKGGNHKLDTKYRKHLAMIEACEDEYNYHHKLFGQGAVDRDFQFHNPQL
Ga0193161_1007271Ga0193161_10072711F001255FPYVTYHAPVCETEFEEVKGQSCVTKPVTECKDVEVPSHKIVTENVCQNVTTAECTGHAGVYYGKREADPQVLVGAVPAVLPYHNCVNKVTEVCYPVQKVEPTTITEQSCLIKGEVECTEVVVATIPKVTCSHAEHTKPAGEAVETE
Ga0193161_1007832Ga0193161_10078321F064419GPTKTFWFNGEEKATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTADASDLEFGVTITPNRKVVTKFGWEWAGVKKVYLDVVGNNPWIGDYKLSRQGEFEEVSGSLYKMKWTGHGETTKGFLRRVSPVETNVVASVNTRNLNVDAIVWKSFAGQKYGFTLNNDKFML
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