NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019079

3300019079: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000052 (ERX1782316-ERR1711880)



Overview

Basic Information
IMG/M Taxon OID3300019079 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0216956 | Ga0193099
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000052 (ERX1782316-ERR1711880)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19193277
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Eukaryota2
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED451
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Eukaryota → Sar1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationIndian Ocean: TARA_039
CoordinatesLat. (o)18.5745Long. (o)66.4895Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F001293Metagenome / Metatranscriptome729Y
F004368Metagenome / Metatranscriptome441Y
F004819Metagenome / Metatranscriptome422Y
F020701Metagenome / Metatranscriptome222Y
F023529Metatranscriptome209Y
F031086Metagenome / Metatranscriptome183Y
F062820Metagenome / Metatranscriptome130N
F068484Metagenome / Metatranscriptome124Y
F089917Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193099_100016All Organisms → Viruses → Predicted Viral3657Open in IMG/M
Ga0193099_101014All Organisms → cellular organisms → Eukaryota1206Open in IMG/M
Ga0193099_101068Not Available1184Open in IMG/M
Ga0193099_101224All Organisms → Viruses → Predicted Viral1128Open in IMG/M
Ga0193099_101283All Organisms → Viruses → Predicted Viral1105Open in IMG/M
Ga0193099_102116Not Available912Open in IMG/M
Ga0193099_103299All Organisms → cellular organisms → Eukaryota763Open in IMG/M
Ga0193099_103315All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45762Open in IMG/M
Ga0193099_106311All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae573Open in IMG/M
Ga0193099_107782All Organisms → cellular organisms → Eukaryota → Sar522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193099_100016Ga0193099_1000166F062820MTTSTWQHINIGDTCVHCGRSTAYGHSDMLFVDRIPADADLLDDDGKPIGVREGYACRECIYMDEDDFFHEDNVSN
Ga0193099_101014Ga0193099_1010141F020701NKSVKPIVGTCLAISALAAMALTSSPAAVTNPGKPVASATQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPETSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIYPKADGLYLCGDKNAAKTWHFDLADIIEQGFNIDGSHFGIKYIMSGRKVTLKVYDGPTRNTINHGPLEMGGHETLDLETVKYGDEHWDSKAKSFTLVEV
Ga0193099_101068Ga0193099_1010681F023529DRVYFVDTKQGSAQPAYSPVAQADLRHPSAITAGDTIYVGEQRCDVISSDSDLTVGLATEASVLENYHSASVVCAQALSENAHSTVDAIVTHDVIEVSLKGSTQSCTSTDRPALRYVFAGDDVSTGADDCIDQSACADILAYNDKNRLVRWASGQTIASSSAHTLMDDLDIAINDRVSIRTLNDHTYETRTVDYRSFAGTTGDNYFTVSQPFTAAHTEKSIFLNYKGTTSSAACSGRGLCDGSSAECQCFKGYTGQACQIQNALAA
Ga0193099_101224Ga0193099_1012243F004819TCNRDINVARASTYVTWDHDKEMWCEVDHLMMNFYIKARTSETREELEDKINRGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDNKDRGDFFDLSGNNLESPMADLERIVNGN
Ga0193099_101283Ga0193099_1012833F004819TCNRDINVARASTYVTWDHDKEMWCEVDHLMMNFYIKARTSETREELEDKINRGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDNKDRGDFFDLSGNNLESPMADLERIVNGG
Ga0193099_102116Ga0193099_1021161F031086MNNYVKELIRDYNGDSYEHFTRYIYMTFQREIDASKGTQKNKYIKIRNDILKYIVSNRGNVTLELRRNKYQ
Ga0193099_103299Ga0193099_1032991F089917TWGPHKSNMALTMFNMHNSLFPSEAGFGGFQEFRRMDRLMEQMDRQRAEFLQDMDTEPAAPEQGKPFAQSYSFSSFTSNTNGEVVTHRSENFQSSAGEKLSRSRRAIGQGESAKAIEETMKGEEQTRTLHNMEEQDLQAFNQQHAARLHWQPFHALEPRAEQPKHALHAALEQDIDRVAGSQ
Ga0193099_103315Ga0193099_1033152F004368MGTRLADIIMDRHEDFLYEDSRAMKLTPYVMAERCLQAELTAIFLDGKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEVNWYEWYESAQLYTEVYE
Ga0193099_106311Ga0193099_1063111F001293MIRNSLICKLINVQASMKENNEKKINNEHETSKLTKAPPKDTAALDKRSVLAKVNSQGSG
Ga0193099_107782Ga0193099_1077821F068484ANEPMDSGDVAPNDRVSLRMADLHTYETRTVDFVSFGGAAGNNFFTVSQPFSAAHVQKRIHLNYKGTTSSAACSGRGLCDGSAAECQCFKGYTGQACQIQNALAA
Ga0193099_107960Ga0193099_1079601F000075LVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
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