Sample 3300019059

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300019059

3300019059: Metatranscriptome of marine microbial communities from Baltic Sea - GS694_0p1

Overview

Basic Information
IMG/M Taxon OID	3300019059 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129055 \| Gp0214191 \| Ga0188863
Sample Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS694_0p1
Sequencing Status	Permanent Draft
Sequencing Center	J. Craig Venter Institute (JCVI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1913769
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metatranscriptome Of Marine Microbial Communities From Baltic Sea
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Baltic Sea
Coordinates	Lat. (^o)	54.570232	Long. (^o)	11.332183	Alt. (m)	N/A	Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102717	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0188863_100285	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188863_100285	Ga0188863_1002851	F102717	DEIGIVLEHDAIMYYKPDIQVPDNYLITLGYKVTDPENYRAFDARDNEPRELIAINGHEGAHAYMMTKKTAQILVDEIEEHGLLGAVDNAYFISGRKTKVPLAIMSPTPAMGWLRKSTIWSGSADRNYNFIPSFEKYYK

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