NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018843

3300018843: Metatranscriptome of marine microbial communities from Baltic Sea - LD3200M_ls1



Overview

Basic Information
IMG/M Taxon OID3300018843 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129055 | Gp0214211 | Ga0188883
Sample NameMetatranscriptome of marine microbial communities from Baltic Sea - LD3200M_ls1
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size121192165
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Marine Microbial Communities From Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)58.581234Long. (o)18.232801Alt. (m)N/ADepth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003289Metagenome / Metatranscriptome495Y
F018020Metagenome / Metatranscriptome237Y
F028371Metagenome / Metatranscriptome191Y
F077370Metatranscriptome117Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0188883_10006393Not Available928Open in IMG/M
Ga0188883_10006583Not Available915Open in IMG/M
Ga0188883_10008725Not Available794Open in IMG/M
Ga0188883_10008904Not Available786Open in IMG/M
Ga0188883_10015369Not Available600Open in IMG/M
Ga0188883_10018272All Organisms → cellular organisms → Eukaryota552Open in IMG/M
Ga0188883_10018592Not Available547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0188883_10006393Ga0188883_100063931F077370QNRDNNRRKILKQNSQQLAVPRPMSILGETIDRAIDILIDIYAVNSIGTPYYSFSTGTSIPVMTSNLTNAMILQFTEYSQLSTIYGLSKLKKIQLGFTRSSNLIGSTSKDLINTPSFFLQTSTIPYNTGSLSLQRAVAQSDNSVEVDLQTFEPKAWNIMMPPAIVSNNAANNQTYTFGSQTWVSTKLFNVQNYPDLFLNLGSLATPSFDASSPNSAFLVGQIHGRMQLSFAGPIVG
Ga0188883_10006583Ga0188883_100065831F077370NNRRRILKQNSQQLAVPRPMSILGETIDRAIDILIDIYAVNSIGTPYYSFSTGTSIPIMTSNLTNSMILQFTEYSKLSTIYGLTKLKKIQLGFTRSSNLIGSTSKDLINTPSFFLQTSTIPYNTGSLSLQRAVAQSDNSVEVDLQTFEPKAWNIMMPPAIVSNNAANNQTYTFGSQTWVSTKLFNVQNYPDLFLNLGSLATPSFDASSPNSAFLVGQIHGRMQLSFAGPIVG
Ga0188883_10008725Ga0188883_100087251F077370MSLLGETANRAIDILIDVYAINSLGVNFYSFSTGTSIPVITYNLTDSMILQFTEYSQLADLYGLSKLKKVQLGFTRASNLIGSNSSDLINTPSFFLQASTIPYNSGTVSLQRAIAQMDNSVEVDLQTFAPKAWSITLPPSIVSFNRSNQQTFTFGSETWISTRLNNTQYYPDLFLNLGALATPTFTTGSPSAAFLVGQIHGRMQLSFACPIVS
Ga0188883_10008904Ga0188883_100089041F028371VVVNESVFISASNDGFNVSGLLDFSGTFNDLLLAEFNTVVSGVPLSEGSGVDLDDSTLDQSVGSDELVVGGVIDDHDDLGLSGDLFRSPGEVTSIESEGLEFVVSSSNSVSSDGLFTDLGEGRRTTRFVLLLLLVDGHTTTGKSSLVSRVSGDTHYV
Ga0188883_10015369Ga0188883_100153691F003289MXGNIVTEVALQTNFGVGFNNMQSDVLIHLTQXQYXWWFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTFRPHGKXGDLIICLIPISXCINIITNSSFILKMIEXQAETGLLTIRIRGKQXYXIYKFELKTFTDILTVPKNIGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQE
Ga0188883_10018272Ga0188883_100182721F018020TVSDTFGLGTTEKVSIILSGYSSLTFEINKVPIPEPVPPPRE
Ga0188883_10018592Ga0188883_100185921F077370KQDKQRQHRKKVLKTNSQQLAVPSPMSILGETVNRAVDILIDVYAVNSALGTAFYSFSNSSSAPNISSNITSSMILQFSEYSELVQIYGLTKLKKIQLGFTRASNYIGSASNVLANTPSFFLQASTIPYSAGSVLLQNKIAQSDNSVEVDLQTYSPKSWDIMLPPSIVSNNRANNQTFTFGS
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