NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300018497

3300018497: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001296 (ERX1782158-ERR1712103)



Overview

Basic Information
IMG/M Taxon OID3300018497 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0217043 | Ga0193270
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001296 (ERX1782158-ERR1712103)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2708696
Sequencing Scaffolds3
Novel Protein Genes8
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean: TARA_093
CoordinatesLat. (o)-34.0614Long. (o)-73.1066Alt. (m)N/ADepth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F000155Metagenome / Metatranscriptome1877Y
F063315Metatranscriptome129N
F079630Metagenome / Metatranscriptome115N
F083643Metatranscriptome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193270_100075Not Available1241Open in IMG/M
Ga0193270_100100Not Available1117Open in IMG/M
Ga0193270_100377All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum662Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193270_100075Ga0193270_1000751F083643TWGDFDQKQPKLIMYGYHAQPTVYHAPHLEQQTAQPLYAQTTNEYFGPAKVLNWTKTEREVLDRTLPSEAERDLASVRRARDVYAGMTEYEREDWDTDLWGQQLLRYDLDDQRDRLERELTYAQDKVRAELDEVWEFYKKEDSYQYDRSPAPAKKSYGYGYEAETDMGTLEDLYDNYDRCDVRETMLRANQLWDGDVLAFRQGWRELNEAEREAHRGAVAEIVARREAEIAGLKQAVIERRIVKRGEVDAANAQLDDAIRTLIAVANAEVETLNDTHQELVLDVLEAVDYFGEEADLKLILSEAGEGSVDLYGEQDVHALYQEDKVAEWKPAKEVQYGYDQRRSYGRPAYGHGYGH
Ga0193270_100100Ga0193270_1001001F063315MKFIAATLFAVASASYAAAEQAEPRLLNWTKSWTSDYKKIDVDAIVTELNRRNEIAVRAVRDETFATTQGLTEEHRNAVDQLIAVFEGDILALREAIQASRDAKRAEIADANAAIRSVQDEQVADLIETLAALNDAQETLLAEILLADMYYDHTRIAKLLDVDGKGQALTWEEDGRPAAATVADSYLSWNAREPAERHYNEYYTAEVQAPVKEKTYGYGQGYGHGYGGYGHGYGY
Ga0193270_100377Ga0193270_1003771F079630SDSDDEAAVQLGDDYFHAGESGQLGSKEYERVTPARFSADSDDIFMRSMIQQYALEAKGPKDAPNEGEPTGHFWMNEATTRAAAAEVLNTHKGLSGDALQKYLDTYFPRTWAHFDVNRTGHVEVIKMPMLMRFLASDQYMSLGE
Ga0193270_100412Ga0193270_1004121F000075IKITMKFAAILAVVAANRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0193270_100451Ga0193270_1004511F000155HGESIKTKSKMKFFALVAAVVANKYDQMNEDELLSQLGSTLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP
Ga0193270_100454Ga0193270_1004542F000075MKFFAVAALATVSANQFDHMNEDELLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0193270_100494Ga0193270_1004942F000155MKFFALVAAVVANKYDQMNEDELLSQLGSTLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP
Ga0193270_100690Ga0193270_1006902F000155MKFFALVAVAAASRYDQMNEDELLVSLESNLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.