| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017923 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118431 | Gp0208781 | Ga0182239 |
| Sample Name | Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_210 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 124760682 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp. | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → planetary subsurface zone → fracking liquid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Texas | |||||||
| Coordinates | Lat. (o) | 30.238 | Long. (o) | -102.628 | Alt. (m) | N/A | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F054403 | Metagenome | 140 | N |
| F086646 | Metagenome / Metatranscriptome | 110 | Y |
| F087432 | Metagenome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0182239_1024189 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales | 1077 | Open in IMG/M |
| Ga0182239_1025373 | Not Available | 1036 | Open in IMG/M |
| Ga0182239_1028346 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 946 | Open in IMG/M |
| Ga0182239_1029735 | Not Available | 911 | Open in IMG/M |
| Ga0182239_1030168 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp. | 900 | Open in IMG/M |
| Ga0182239_1033894 | All Organisms → cellular organisms → Bacteria | 816 | Open in IMG/M |
| Ga0182239_1035757 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 780 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0182239_1024189 | Ga0182239_10241892 | F087432 | LIIYENGEYTPCTYRVILQNRGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI |
| Ga0182239_1025373 | Ga0182239_10253732 | F087432 | LIIYENGEYTPCTYRVTLQNKGVEETHYANFRTYWEDMVAKHDHLTNLVFEEVTFSAEQDARLQEISGLDIPQGFQAEVREYVENGNFPEGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI |
| Ga0182239_1028346 | Ga0182239_10283461 | F000388 | MKVIKVTKEYFETDNEKVYFFEPLEKEISVEDMQKIVDANEKLVKELEDGTNTVSR |
| Ga0182239_1029735 | Ga0182239_10297352 | F087432 | LIIYENGEYTPCTYRVILQNRGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISGLDIPQGFQAEVREYVENGNFPEGLDNPLASLKYKKEMNDAYKMILESEGLI |
| Ga0182239_1030168 | Ga0182239_10301681 | F086646 | TMDFIFRIQNHYFEKGTPWVELDKIKQRSWFLSVDIEDDEVLPCYDTVHELRISQGIAFKSVKILTGKTQETHPYWEALLDMSYSNSTELRDVIFKDLPGESGNYMLNIWFDYDGEDINFGDTFKKLCEYRHKWDDGWVCSRCGVRKADWVEADIKGGE |
| Ga0182239_1033894 | Ga0182239_10338942 | F000388 | MKVIKVTKDYYETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKEMKDGKSSNRL |
| Ga0182239_1035757 | Ga0182239_10357573 | F054403 | MEMDYEDRLFIREVGARAARVLKTRNIRLWNEFKQRCEENSEKPESVLGKYLYKFAKSLVEEDGEFAEDLLETTIKMSALAKRKELLESLDEIAEVKKKLESAESSTIDKLIERLIETEIAKTAISPIDMIKADMAKQEH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |