NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017651

3300017651: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig MG (version 2)



Overview

Basic Information
IMG/M Taxon OID3300017651 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127392 | Gp0191738 | Ga0182742
Sample NameEnriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig MG (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size683463723
Sequencing Scaffolds23
Novel Protein Genes24
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi4
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
Not Available4
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → anthropogenic environment → compost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001784Metagenome / Metatranscriptome635Y
F005470Metagenome / Metatranscriptome399Y
F006009Metagenome / Metatranscriptome384Y
F007999Metagenome341Y
F011188Metagenome / Metatranscriptome294Y
F016219Metagenome / Metatranscriptome249Y
F021612Metagenome / Metatranscriptome218Y
F028371Metagenome / Metatranscriptome191Y
F028447Metagenome / Metatranscriptome191Y
F032031Metagenome / Metatranscriptome181Y
F033655Metagenome / Metatranscriptome176Y
F037930Metagenome / Metatranscriptome167Y
F042887Metagenome / Metatranscriptome157Y
F047414Metagenome / Metatranscriptome149Y
F049342Metagenome / Metatranscriptome146Y
F056036Metagenome138Y
F069541Metagenome / Metatranscriptome123Y
F072875Metagenome / Metatranscriptome121Y
F080249Metagenome / Metatranscriptome115Y
F086140Metagenome / Metatranscriptome111Y
F086315Metagenome / Metatranscriptome111Y
F092377Metagenome107Y
F092683Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0182742_1000102All Organisms → cellular organisms → Bacteria → Proteobacteria166689Open in IMG/M
Ga0182742_1000791All Organisms → cellular organisms → Bacteria → Proteobacteria45966Open in IMG/M
Ga0182742_1002396All Organisms → cellular organisms → Bacteria → Proteobacteria20804Open in IMG/M
Ga0182742_1026054All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3200Open in IMG/M
Ga0182742_1028256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium3028Open in IMG/M
Ga0182742_1034769All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14622626Open in IMG/M
Ga0182742_1038867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2430Open in IMG/M
Ga0182742_1048119All Organisms → cellular organisms → Bacteria → Terrabacteria group2089Open in IMG/M
Ga0182742_1092368Not Available1300Open in IMG/M
Ga0182742_1097397Not Available1250Open in IMG/M
Ga0182742_1098144All Organisms → cellular organisms → Bacteria1243Open in IMG/M
Ga0182742_1117041Not Available1086Open in IMG/M
Ga0182742_1125020All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1032Open in IMG/M
Ga0182742_1125525All Organisms → cellular organisms → Bacteria1029Open in IMG/M
Ga0182742_1141734Not Available936Open in IMG/M
Ga0182742_1160731All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium848Open in IMG/M
Ga0182742_1183591All Organisms → cellular organisms → Eukaryota763Open in IMG/M
Ga0182742_1206435All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi695Open in IMG/M
Ga0182742_1211868All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans681Open in IMG/M
Ga0182742_1240999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi616Open in IMG/M
Ga0182742_1254529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi590Open in IMG/M
Ga0182742_1261385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium578Open in IMG/M
Ga0182742_1291337All Organisms → cellular organisms → Eukaryota532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0182742_1000102Ga0182742_1000102133F086140MATGTTQQVVEYLKAHPDIAKKAMEYVKTNPGDAKNALKDIASQRGWDLSQIDMSTLTKELSNIVPH
Ga0182742_1000533Ga0182742_100053331F092377MNLQTLQAQLNQLERKRQQLEKRIKERASKQYAALPAKLGLKNIDDLIIQLLPYGSSSLRARLNQQGVLPGGKRRGRPPRKSRGTRYSAEVKAAVKRAVEAGDRTVAEISREFGPSVFSIKDWKKQWGLTRSRRKK
Ga0182742_1000791Ga0182742_100079110F001784MGEVIHANFGTEREWEQTHEKTVDGLLAIGSLFGDDEALMRAKADCVYHILREIVEDVPSVQITTRMPDNLSEEQLAMLTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKVRPS
Ga0182742_1002396Ga0182742_10023968F080249MADDKKKTGNPDRNLIAFNQKYEFNYAVRQLQKQIPDTTRQEAKEALTKAARQVSPSEGREKVMRAARKILKD
Ga0182742_1026054Ga0182742_10260544F056036VSARLKRELGAGVAVALLALGGAYWQAERTNAFEADTRTGETLRLVCPLH
Ga0182742_1028256Ga0182742_10282563F032031MTYDPHDTASIPVGTTVIAADGSVLGKIREVHPHYLLAGIEGQHNDLEIPVHAIREFANGKLRVSINREAATSVDDVETAHRTTESPGDAT
Ga0182742_1034769Ga0182742_10347692F072875MGARMTSPQPYLTVASILSGFCISVFMFRIQRELGVRDRHPDWPNWLAWADYLIVATIVLSIVFVILPLVTVPVPGPVAYSVAAGACAAASILLLAYPFAILDHYRIEIGRSRILRGESPQARHKGEPIERIIVMTAGATAAATFAAVVWLWNS
Ga0182742_1038867Ga0182742_10388672F037930MTAETTAPAKPRLSREARQIERQYRNVITLFLAGRLGNFSHQRHVHIANILHHLPYGRELMHLGLQVMAYRNFVPDKYRAEITDRYWDQLDGTLPDPAVFNDVPGGADGRRQERGAHVSGLTD
Ga0182742_1048119Ga0182742_10481192F086315MPGLRRRTLTVLLVTAAVTGVSAAGVLAGSQATEPKRGGGHHGKPVAGFPPNVDRVDLSGYEIETRYTLGRNTGNTFQQTYEATTVQGVPVEGPFVGMTFPPQDYVALAIAPKTLYIAWLDPETHAIVDAFVMNFATGVVFDFAPGSAEPESSGTVRILRAGATPLP
Ga0182742_1092368Ga0182742_10923681F049342ALSIDVTKNKFFAILNAIFDFMAFTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKNHYLGLLLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCKKRLLKLQARKGLQVSIVNKNRED
Ga0182742_1097397Ga0182742_10973971F016219MVAVTYGVRVPAAAAATPRKSLFARFMDALIESRMEPARREIRRHANLLPYTFDEAGNRVVPTRSGTLPFNAA
Ga0182742_1098144Ga0182742_10981441F007999RQTHERAAKARQNLVNALRECGELADAVETFEGNELMEVLDYLDSLRFVMAESGQILQGVVRGSR
Ga0182742_1117041Ga0182742_11170411F069541MMDISVTCEKWLASYPKFNWKSTFSFLQAPEVLKAIEFCDNGIACFVKGLQYEHDKDYHEALNCYENGAMQLDSLCLFRLHEIYSGDTNFGVEYIERQAMCHLAYSALLSQFETFDHKVTFWAKLEAFWKKDAAHKDYLMELLNNPPADYLQSTGPLFAKLFTFYN
Ga0182742_1125020Ga0182742_11250201F033655LSDENSVDIDLGLFRDVVQSSFSFLFRCLDYLFGKYICYFFLDSEGDTSDGSSLDSLHQVGSESSNFISHSLGRKDGNITEDLLVEVEIVGKLSVVLFNQNLSGSLDSLSSNSSLKAEVREGE
Ga0182742_1125525Ga0182742_11255251F042887VRGHPARVKSDSWREAIRDAVTAAYPQAPFTSPPEGTKFTVEMVFRMTPQDLARPACDLDNFAKPVIDTLFTSQNVSRLNGVLLPGVNDTWVFRLVLEKVGVKTSQEQGADITVTWHPSGTPDLRTS
Ga0182742_1141734Ga0182742_11417341F047414LSSEKVKHYLITHSYIISDLSPRMHRDSLILSPLFSTNNHNGGFFGNFTPRYFSNVPHMPDNNKGFGPDDFLRPSPTHMDIDVNSRFDKAVDNLKMELRNNPAPLMNDHHGMDQQGLNLDIDLIDDSYLHAPLTKSPHIQFPGSQPNSKCSFKKFGEWTLSPNASFLPRKKF
Ga0182742_1160731Ga0182742_11607312F021612MNFSGADRKRQLITVGVGTVLMLVMAGVLIAGFRLATQMNANVSALQTASALQTYPNTLVAQLTSLRDRLETRAYSGQALA
Ga0182742_1183591Ga0182742_11835911F005470KEGQLITEFPPEMVARSRLLTKLVEEFNSTEVDLEPAPGKDFSPATINKVKEFLEKFDKGLTKMPKKPLLIFVTYNDWLDNNFDEKLREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDFEGVAAEDEEELNKE
Ga0182742_1206435Ga0182742_12064351F028447APKPPPVERVDRFWTPDNPDGSGWADVDWASAIRGSKYHYQHGKPYAEAMAALPPFYRVVTRLESDELIPHENSYYIPREELGNFLSEMALAGGIEQIWHVEACADPPPESRVRPPV
Ga0182742_1211868Ga0182742_12118682F006009MTNGERKALWRGVAAGTMVGLAIGGMIALVIATKPGLFAALLQ
Ga0182742_1240999Ga0182742_12409991F011188EKISLGGVSVETYNIYMDELPTGEEFDGDEMVEVEFRVVPGSDDDGDPENNAVIAGLDLVDLINMRDALQQEIDNYALTALEVEASNLVEE
Ga0182742_1254529Ga0182742_12545291F011188PTGEEFDGEEMIEVEFRVVPNREDDGDATSNAVIAGLDLVDLINLRDSLQQEIDNYALSALEVAASAAVNEDVG
Ga0182742_1261385Ga0182742_12613851F092683LGWYDPDRKKPARAKLAEAVERYEEKFGRTARCCLTSPQDALDLAEPSRKFPGELAVEVQPRNYIARWTFYIGEEIVEPTRHDGVAEAA
Ga0182742_1291337Ga0182742_12913371F028371FFLLLSLSDFDSVVSNVPLSEGSGVDLDDTALDQSIGSDEFVVCGVVDDLEDLGLSGDLFRRPGEVSSIELQGLVFVVTSSNTESSDSLLTDLGKSGGTTGFVLLLLFMDWHTTTGKSSLVS
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