NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017642

3300017642: Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 9 (version 2)



Overview

Basic Information
IMG/M Taxon OID3300017642 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046201 | Gp0191376 | Ga0183098
Sample NameMicrobial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 9 (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size146031532
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Berkeley, California
CoordinatesLat. (o)37.82Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004177Metagenome / Metatranscriptome449Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0183098_10024All Organisms → cellular organisms → Bacteria → Acidobacteria716653Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0183098_10024Ga0183098_10024574F004177MSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQPLYLNRPVTVGDVKAYVQAAPTGSGLTFTIYVGGTTWLTLTIPAGQTAVVATPSQISTLTQIPANTSVSIGIAAVGTTFPGANLSVFIYS

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