Sample 3300017380

Overview

Basic Information
IMG/M Taxon OID	3300017380 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211790 \| Ga0186078
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 449 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0324_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	66360792
Sequencing Scaffolds	11
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	4
Not Available	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000085	Metagenome / Metatranscriptome	2467	Y
F000462	Metagenome / Metatranscriptome	1107	Y
F002472	Metatranscriptome	556	Y
F006064	Metatranscriptome	382	N
F006386	Metatranscriptome	374	Y
F008230	Metatranscriptome	336	Y
F018723	Metagenome / Metatranscriptome	233	Y
F034936	Metagenome / Metatranscriptome	173	Y
F035313	Metatranscriptome	172	Y
F035774	Metatranscriptome	171	Y
F036711	Metagenome / Metatranscriptome	169	Y
F064392	Metatranscriptome	128	Y
F067800	Metagenome / Metatranscriptome	125	Y
F088926	Metagenome / Metatranscriptome	109	Y

Family

Category

Number of Sequences

3D Structure?

F000085

Metagenome / Metatranscriptome

2467

F000462

Metagenome / Metatranscriptome

1107

F002472

Metatranscriptome

556

F006064

Metatranscriptome

382

F006386

Metatranscriptome

374

F008230

Metatranscriptome

336

F018723

Metagenome / Metatranscriptome

233

F034936

Metagenome / Metatranscriptome

173

F035313

Metatranscriptome

172

F035774

Metatranscriptome

171

F036711

Metagenome / Metatranscriptome

169

F064392

Metatranscriptome

128

F067800

Metagenome / Metatranscriptome

125

F088926

Metagenome / Metatranscriptome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186078_1006871	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2031	Open in IMG/M
Ga0186078_1015046	Not Available	1388	Open in IMG/M
Ga0186078_1022637	All Organisms → cellular organisms → Eukaryota	969	Open in IMG/M
Ga0186078_1022912	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	955	Open in IMG/M
Ga0186078_1025205	All Organisms → cellular organisms → Eukaryota → Sar	853	Open in IMG/M
Ga0186078_1026299	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	807	Open in IMG/M
Ga0186078_1026331	All Organisms → cellular organisms → Eukaryota → Sar	806	Open in IMG/M
Ga0186078_1029255	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	701	Open in IMG/M
Ga0186078_1031947	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	624	Open in IMG/M
Ga0186078_1034541	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	564	Open in IMG/M
Ga0186078_1036563	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	526	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186078_1006871

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

2031

Open in IMG/M

Ga0186078_1015046

Not Available

1388

Open in IMG/M

Ga0186078_1022637

All Organisms → cellular organisms → Eukaryota

969

Open in IMG/M

Ga0186078_1022912

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

955

Open in IMG/M

Ga0186078_1025205

All Organisms → cellular organisms → Eukaryota → Sar

853

Open in IMG/M

Ga0186078_1026299

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

807

Open in IMG/M

Ga0186078_1026331

All Organisms → cellular organisms → Eukaryota → Sar

806

Open in IMG/M

Ga0186078_1029255

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus

701

Open in IMG/M

Ga0186078_1031947

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum

624

Open in IMG/M

Ga0186078_1034541

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

564

Open in IMG/M

Ga0186078_1036563

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata

526

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186078_1006871	Ga0186078_10068712	F064392	MLAAEIPTPGRGLARGLESAPGSPIAGGLPGADDVPNVIVVAGRHKDRENQDLQGEYHRIANFHGRPAYRKPGTRTCIRYWSVADRWLIDREGLQESDTCNAYAEQGGVLHPANEELVWRVWESKHKQHVRDPEMLVTAAPSSIQVVGRAAGRENFALNGQYHLVGLHQGRVAYQKANSKHAIRYWALGDRWLIDLDGLRDVDVCNAYADAHGTVHAGAVGLQWHVWDSDKGRHVLDSTLQSVVAPPVIELVGREPPKENQSMNGSYHLVGLHAGRPAFMKADGSGHAIRYWPREDRWLVDLAGLRDVDLCNAYAEAVGGFEHPGDLGMVWHVWETSRGRHLTDPAVRTFVAPHAVRIFGRDVYKENSAVNGEYRLVDVVESKPAYKKDDSDHVIRYWPAEDRWIVDLEAGFQGGDVANAYADAKGAEHPGNTELLWYVWETSRGCHVADEEIVAEPIYLANVDWSKVPGIRASIGSEASSVPSDEEED
Ga0186078_1015046	Ga0186078_10150461	F035774	ANHVFMLTTLFGDDDNMAGWGAPLFHGCICDVDDEIQYHYRSTGSKPKNKTAKSDAMELRVPLSVPKVRGFPTYTSAPDQPLLGVPIREGSLWHLSAQDRFEPVTFSLYINGFAFSTADGIEASVSLSPFSLVRNCRFQSGECSKLKSFKVSLLEPDPCCYFAVRSACEREADEERSDWVLGLSHTILLITDSLLPTFSVSCDPVEGIQRTSRRLMAGYLIHRDDSTTISVLFCELNAHSAHGAKFVLYENEHCESVVMEIMITESSVCCDVVGINCSCFIVDCHHFASQTPSERKLWLRALSNVKVKIQNRAPDPSEEELTHYRMSIREHITALEATLEPRIVNEALLGRCANQVLKPSEETLLVAPRPVMDQKPLLGSHVSL
Ga0186078_1017009	Ga0186078_10170091	F000462	RVCSFTSVVQLRLRARFVTMKRFVLPALLACVPAMAESTVESVTPVQKVIQLLDNMLAKGKEEKHAEQVQFAAFKQFCDDTTVEKKRSIKEAEEKIEVLKADISKFTADAAKLTKEIAGHDEDISVWTGDKKAATSVRQLEKTDYDALHKDYSESVDALQRAIAVLKKQAYDRKQTSLAQLKDLQQLTLIPKEAKSAIDAFLQQDQDAPEGLEVSAPEAAGYEFQSHGIIEVLEKLEEKFIAERTDLEKAEMNSKHAYDMLMQDLTAQVEQASADRSSKAEIKAKKLQAKADAQGDLTDTTTTKEADEKYLSDLTGTCTQKASDFEMRQQLRAEELEAIQKAIEILSSSAVSGHAETYLPSLAQKASALAQLRAAGSAPQQLQQQRAADYLAVQGRELKSHVLSALATKITADPFAKVKKMI
Ga0186078_1022637	Ga0186078_10226371	F002472	VKQAPSWNKVVEAFHGNPDVAFGDVALSKNQVRDIHGVSQGAGSGGWPTIRYFNKETGYGGAAYKKKTSQAMCDELGPKGDYMQQYIEEAGGTSLCSIANPESGCSEKQKTFIDKWQSKDSSELEKQLNRLKGMLEKDSGSMKPELLSWAKQRLAIFKQLTARQRSEL
Ga0186078_1022912	Ga0186078_10229121	F006064	RRRYSSFFLQATMSMFCCDGGPCKNGSKLRSDTSGPAPIVPEGNQSRGQQSLPMLQDWDKLGAREKEQVQEKLESIVNAFARELTRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFSNMQHISFGYDLTDFTHIPVSLPSDALAAVIVMDNRRMNLVFSSPMERDEFVTCMLVLKERHRRSNPEGSAGPSADRR
Ga0186078_1024910	Ga0186078_10249102	F000085	LVLGSRALQTCYSAPLCESEALKATKAELLSSELRRMSLPKPMAAPLALLLMLLPGGQGQNWPACQEQNTVIRNAGRALFANMQGFGAVVGCFQDDCQNSDKFVASSIESCTKVCLSIPECEFWVWGQEEGEQKCWLRLGDDGREAGEGWVSGARTCHPPNQQAQVMGNVECWIDGFDYDTCCDPKFGPSGNTQCWDGVFNYERCCFPRDEL
Ga0186078_1025205	Ga0186078_10252051	F036711	MPVWQNVNLKQKAIFEIIQREPVETLPYYLNDEELDFFVRGLSMGPHAKTYLPQIVEREKRPIYICRGYAPPTYSRVVKLRYYGPDPLLKDAGSNWSAGEPGELLEVVIGWRWLYAYWDGPLVDEVDGAWNEKQWPSIANPSWSWTSVKIVTPPYYVPEDGRPWRASNPALLPVSVPKGKGRGKGGSGSGMLDTTASEANPKVGCRTEDEWS
Ga0186078_1026299	Ga0186078_10262991	F018723	MASKADPKAKAKGKEPLCEIFPVKDVFPLFQDRKTKQLPLNDVPYVLRACGLTIYGEEEAKIKAEVEKVDGMGKPVSLSTLQDWMENNQASYTRTHEEAYNALWTLCQEGIIGEVKDKSQTIIIPHLRHLVSEVGDKIKPDTFDKVIKGDNTITSDAINLDDFINYLKK
Ga0186078_1026331	Ga0186078_10263311	F035313	LCSQQRALVVSYQLLLVLTASCRVFPKVVDMADVPAGYVNGCGHEFDPKEAEKSGKLTKDDPIQEHYKKGGFFGSITGAFGDKKTMYCHHMTTDCEPAVRAAKRQNIDCKTAEEVWNVIGRKPCCGRFAYDSKSGKLKCGAVVKKDHDNTCNGDTCLFVASGLDCPVPTWAHK
Ga0186078_1029255	Ga0186078_10292551	F008230	FWLKCPGSWLLLDFLFNHTVRSPCKPAPKPPRFVKMAMRMTRRLLSVPAVKDFATYEAMKTSGTTMMVGFFNAHFSTAGKMYQSQFESMAASYPKAKFYTCDIDDVPMAAYDAEVTEVPSIVMLPLGLKPDGSPYDKSDMVVVAPELARFDQVLPRAKSVIDGTTVIENPEGQKPWEFDPATGTTMPPHQ
Ga0186078_1031130	Ga0186078_10311301	F088926	ANSYRLQEECDVVSLRLAKYKGQLILSDFKSVMLASLRSLVKDWGSAHEVAWSWLWSNVERLLQAMLGKPKHMESALSAFLKSIDEETMAFIRREIYSKFFTLAPGGQDYFKQSTTRLHFIADKVVSMTMDMYKDPKKLVEDISALGLRHVGYGIPTPLFSPFVTCTIQVVASLTKDPTAEEAFRWSLGLLSRILVRVIIEGSTIVMKAINANS
Ga0186078_1031947	Ga0186078_10319471	F034936	MQKSHSQTGGPGFLKDSKVGSATGFLTVAGTMLALPHGKRNNMAAPRIFDGVSEYQKHFREVPHCYASMDRKPLTPYHPNAPRSRLAMEDAPVPLKNASTIEFHDRFCVHKRRFVTTHKNHYTGEQQDLRSNPGMIADSTKLKRFLSEK
Ga0186078_1034541	Ga0186078_10345412	F067800	MSVNMANVVMPAVGGLVGLWAASKIVPVMYHWDLIPGVGSPAYWERAKKIRYDYYSEGIVYSPYDTGDPIKELPAESVGKMYLRQKGGGWKLQSEM
Ga0186078_1036563	Ga0186078_10365631	F006386	GANDTGGVFAILWWLNFPDSGPGGKCDKAFYNKWLPVRVKHVVFVLSLWTLVWLLGSWGLDRPLIDGWKFTFIVSAFFRLGFALAWIFIANVNHCHMWNEFLARDPERTWPVLHACMAFALGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVEILANGLWKSD

Scaffold ID

Protein ID

Family

Sequence

Ga0186078_1006871

Ga0186078_10068712

F064392

MLAAEIPTPGRGLARGLESAPGSPIAGGLPGADDVPNVIVVAGRHKDRENQDLQGEYHRIANFHGRPAYRKPGTRTCIRYWSVADRWLIDREGLQESDTCNAYAEQGGVLHPANEELVWRVWESKHKQHVRDPEMLVTAAPSSIQVVGRAAGRENFALNGQYHLVGLHQGRVAYQKANSKHAIRYWALGDRWLIDLDGLRDVDVCNAYADAHGTVHAGAVGLQWHVWDSDKGRHVLDSTLQSVVAPPVIELVGREPPKENQSMNGSYHLVGLHAGRPAFMKADGSGHAIRYWPREDRWLVDLAGLRDVDLCNAYAEAVGGFEHPGDLGMVWHVWETSRGRHLTDPAVRTFVAPHAVRIFGRDVYKENSAVNGEYRLVDVVESKPAYKKDDSDHVIRYWPAEDRWIVDLEAGFQGGDVANAYADAKGAEHPGNTELLWYVWETSRGCHVADEEIVAEPIYLANVDWSKVPGIRASIGSEASSVPSDEEED

Ga0186078_1015046

Ga0186078_10150461

F035774

ANHVFMLTTLFGDDDNMAGWGAPLFHGCICDVDDEIQYHYRSTGSKPKNKTAKSDAMELRVPLSVPKVRGFPTYTSAPDQPLLGVPIREGSLWHLSAQDRFEPVTFSLYINGFAFSTADGIEASVSLSPFSLVRNCRFQSGECSKLKSFKVSLLEPDPCCYFAVRSACEREADEERSDWVLGLSHTILLITDSLLPTFSVSCDPVEGIQRTSRRLMAGYLIHRDDSTTISVLFCELNAHSAHGAKFVLYENEHCESVVMEIMITESSVCCDVVGINCSCFIVDCHHFASQTPSERKLWLRALSNVKVKIQNRAPDPSEEELTHYRMSIREHITALEATLEPRIVNEALLGRCANQVLKPSEETLLVAPRPVMDQKPLLGSHVSL

Ga0186078_1017009

Ga0186078_10170091

F000462

RVCSFTSVVQLRLRARFVTMKRFVLPALLACVPAMAESTVESVTPVQKVIQLLDNMLAKGKEEKHAEQVQFAAFKQFCDDTTVEKKRSIKEAEEKIEVLKADISKFTADAAKLTKEIAGHDEDISVWTGDKKAATSVRQLEKTDYDALHKDYSESVDALQRAIAVLKKQAYDRKQTSLAQLKDLQQLTLIPKEAKSAIDAFLQQDQDAPEGLEVSAPEAAGYEFQSHGIIEVLEKLEEKFIAERTDLEKAEMNSKHAYDMLMQDLTAQVEQASADRSSKAEIKAKKLQAKADAQGDLTDTTTTKEADEKYLSDLTGTCTQKASDFEMRQQLRAEELEAIQKAIEILSSSAVSGHAETYLPSLAQKASALAQLRAAGSAPQQLQQQRAADYLAVQGRELKSHVLSALATKITADPFAKVKKMI

Ga0186078_1022637

Ga0186078_10226371

F002472

VKQAPSWNKVVEAFHGNPDVAFGDVALSKNQVRDIHGVSQGAGSGGWPTIRYFNKETGYGGAAYKKKTSQAMCDELGPKGDYMQQYIEEAGGTSLCSIANPESGCSEKQKTFIDKWQSKDSSELEKQLNRLKGMLEKDSGSMKPELLSWAKQRLAIFKQLTARQRSEL

Ga0186078_1022912

Ga0186078_10229121

F006064

RRRYSSFFLQATMSMFCCDGGPCKNGSKLRSDTSGPAPIVPEGNQSRGQQSLPMLQDWDKLGAREKEQVQEKLESIVNAFARELTRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFSNMQHISFGYDLTDFTHIPVSLPSDALAAVIVMDNRRMNLVFSSPMERDEFVTCMLVLKERHRRSNPEGSAGPSADRR

Ga0186078_1024910

Ga0186078_10249102

F000085

LVLGSRALQTCYSAPLCESEALKATKAELLSSELRRMSLPKPMAAPLALLLMLLPGGQGQNWPACQEQNTVIRNAGRALFANMQGFGAVVGCFQDDCQNSDKFVASSIESCTKVCLSIPECEFWVWGQEEGEQKCWLRLGDDGREAGEGWVSGARTCHPPNQQAQVMGNVECWIDGFDYDTCCDPKFGPSGNTQCWDGVFNYERCCFPRDEL

Ga0186078_1025205

Ga0186078_10252051

F036711

MPVWQNVNLKQKAIFEIIQREPVETLPYYLNDEELDFFVRGLSMGPHAKTYLPQIVEREKRPIYICRGYAPPTYSRVVKLRYYGPDPLLKDAGSNWSAGEPGELLEVVIGWRWLYAYWDGPLVDEVDGAWNEKQWPSIANPSWSWTSVKIVTPPYYVPEDGRPWRASNPALLPVSVPKGKGRGKGGSGSGMLDTTASEANPKVGCRTEDEWS

Ga0186078_1026299

Ga0186078_10262991

F018723

MASKADPKAKAKGKEPLCEIFPVKDVFPLFQDRKTKQLPLNDVPYVLRACGLTIYGEEEAKIKAEVEKVDGMGKPVSLSTLQDWMENNQASYTRTHEEAYNALWTLCQEGIIGEVKDKSQTIIIPHLRHLVSEVGDKIKPDTFDKVIKGDNTITSDAINLDDFINYLKK

Ga0186078_1026331

Ga0186078_10263311

F035313

LCSQQRALVVSYQLLLVLTASCRVFPKVVDMADVPAGYVNGCGHEFDPKEAEKSGKLTKDDPIQEHYKKGGFFGSITGAFGDKKTMYCHHMTTDCEPAVRAAKRQNIDCKTAEEVWNVIGRKPCCGRFAYDSKSGKLKCGAVVKKDHDNTCNGDTCLFVASGLDCPVPTWAHK

Ga0186078_1029255

Ga0186078_10292551

F008230

FWLKCPGSWLLLDFLFNHTVRSPCKPAPKPPRFVKMAMRMTRRLLSVPAVKDFATYEAMKTSGTTMMVGFFNAHFSTAGKMYQSQFESMAASYPKAKFYTCDIDDVPMAAYDAEVTEVPSIVMLPLGLKPDGSPYDKSDMVVVAPELARFDQVLPRAKSVIDGTTVIENPEGQKPWEFDPATGTTMPPHQ

Ga0186078_1031130

Ga0186078_10311301

F088926

ANSYRLQEECDVVSLRLAKYKGQLILSDFKSVMLASLRSLVKDWGSAHEVAWSWLWSNVERLLQAMLGKPKHMESALSAFLKSIDEETMAFIRREIYSKFFTLAPGGQDYFKQSTTRLHFIADKVVSMTMDMYKDPKKLVEDISALGLRHVGYGIPTPLFSPFVTCTIQVVASLTKDPTAEEAFRWSLGLLSRILVRVIIEGSTIVMKAINANS

Ga0186078_1031947

Ga0186078_10319471

F034936

MQKSHSQTGGPGFLKDSKVGSATGFLTVAGTMLALPHGKRNNMAAPRIFDGVSEYQKHFREVPHCYASMDRKPLTPYHPNAPRSRLAMEDAPVPLKNASTIEFHDRFCVHKRRFVTTHKNHYTGEQQDLRSNPGMIADSTKLKRFLSEK

Ga0186078_1034541

Ga0186078_10345412

F067800

MSVNMANVVMPAVGGLVGLWAASKIVPVMYHWDLIPGVGSPAYWERAKKIRYDYYSEGIVYSPYDTGDPIKELPAESVGKMYLRQKGGGWKLQSEM

Ga0186078_1036563

Ga0186078_10365631

F006386

GANDTGGVFAILWWLNFPDSGPGGKCDKAFYNKWLPVRVKHVVFVLSLWTLVWLLGSWGLDRPLIDGWKFTFIVSAFFRLGFALAWIFIANVNHCHMWNEFLARDPERTWPVLHACMAFALGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVEILANGLWKSD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017380: Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 449 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0324_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences