| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017354 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211973 | Ga0186261 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 590 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1426) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 53100319 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000342 | Metatranscriptome | 1262 | Y |
| F027184 | Metatranscriptome | 195 | N |
| F042164 | Metagenome / Metatranscriptome | 158 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186261_103717 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 2207 | Open in IMG/M |
| Ga0186261_115807 | Not Available | 1057 | Open in IMG/M |
| Ga0186261_115904 | Not Available | 1050 | Open in IMG/M |
| Ga0186261_125708 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales | 637 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186261_103717 | Ga0186261_1037172 | F027184 | FGSSIISGENFLPRCAMSMHDLLEGVRLMAQAIRALSEQNTEAGTRALADAEQRFQGAAGLEGVLSSLQNNASRVPELEASFRSVERRLQDGGEDGAIAGNFRQSGAKTDAQILKKVSTRLQDFEAQITAQLSNMQGDFDKKLSHLNRGASGMRPLDTTSASAGLDTIAEDLDALKYDVGELKDLLSNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKGEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESNAKITSDTDQAIRL |
| Ga0186261_115807 | Ga0186261_1158071 | F000342 | MNLVGICMNIFFPWIVFCLLYAMLSFSFHYRHPTWAWIVVGCGFLVVALVLFIAFRARRRGNEPMWYNFAALALFLAVLLAAVFGDMNFWYNMQPFYDIENLNTYPNVDPSMDRGQQRMDAGRVYFTQDTRVDTTKAMGFKNLDIYCVAPIVKGEKAPVTFDFWAVGINCCSGQSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFKITAAHPLFFYWMQDPVAEMNAYRDEGFKYYLLGIFSHFAFNLFCVVCAVVGFSKVGA |
| Ga0186261_115904 | Ga0186261_1159041 | F000342 | WHRALGAAASPPFTGSETSKNRSCAPARGPPLLDRAMLPGGELKGSTMFAPGKKRRINLVAIAMNVFVPWLVFCVMYAMVSFSFHYQHPTWTWVLVVVGYIGVAILAVVTWRTKLRDRDPTWYGYAVLALFFAVTFSFIFGDMNFWYNMQPFYDIENLNTYPNVDPSVDRGQQRMDAGRAYFTQGTKVDVTKSMGFKNLDIYCVAPIVKTGEKPDTYDFWAVGTNCCSGNSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFRITAAHPLFFYWMQDPVAEMNSYRDEGFKYYLLGIFTFFSLNLFGVLCAVIGFSKF |
| Ga0186261_125708 | Ga0186261_1257081 | F042164 | GEDLTFVDGEAQAALEGIGPPGVPADKWVFQQLVAAALAAPEGCVWKSGGKFILSNEERNQAPSAIIALLERGNPGSAIGIAVRALVAYTEKEHDCRVTAIQINFHANQDSSHKQHRDIFGAGQKGGINCTCSFMKCIGTVCYSFGSSRQVMTETLTDKRSRYEACGEECQGMRVKKWFQSGMAMFFNDKWNNSHSHGIPKMEKPCGPRIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |