| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017350 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211943 | Ga0186231 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 127 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0736) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 48984678 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 22 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 8 |
| Not Available | 9 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -48.0 | Long. (o) | -16.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010973 | Metatranscriptome | 296 | Y |
| F016355 | Metatranscriptome | 247 | Y |
| F017781 | Metagenome / Metatranscriptome | 238 | Y |
| F038969 | Metatranscriptome | 164 | Y |
| F044273 | Metagenome / Metatranscriptome | 154 | N |
| F058660 | Metatranscriptome | 134 | Y |
| F098601 | Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186231_112117 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 1219 | Open in IMG/M |
| Ga0186231_115703 | Not Available | 1010 | Open in IMG/M |
| Ga0186231_116534 | Not Available | 968 | Open in IMG/M |
| Ga0186231_118646 | Not Available | 868 | Open in IMG/M |
| Ga0186231_119889 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 813 | Open in IMG/M |
| Ga0186231_122057 | Not Available | 730 | Open in IMG/M |
| Ga0186231_122150 | Not Available | 727 | Open in IMG/M |
| Ga0186231_122152 | Not Available | 727 | Open in IMG/M |
| Ga0186231_122963 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 700 | Open in IMG/M |
| Ga0186231_123700 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 674 | Open in IMG/M |
| Ga0186231_124403 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 651 | Open in IMG/M |
| Ga0186231_124662 | Not Available | 643 | Open in IMG/M |
| Ga0186231_126043 | Not Available | 602 | Open in IMG/M |
| Ga0186231_126171 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 598 | Open in IMG/M |
| Ga0186231_128610 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 532 | Open in IMG/M |
| Ga0186231_128848 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 526 | Open in IMG/M |
| Ga0186231_129793 | Not Available | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186231_112117 | Ga0186231_1121171 | F038969 | MVFVLLPIVVSMMSTAAIDAFISNKSAPPVASTTTLTRHNAQHGVQQQQQQRPSHSLSSRSVGHQSGLSERPTRRKSALAFSPADIDGAATLLSMKLDDAKTIANPTQVLTDASYVVMDPNKFFPDIKISKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCINSAKGECTEECALEFEELEAALNIHAPAIQPAAIAV |
| Ga0186231_115703 | Ga0186231_1157031 | F010973 | MTPFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFTVAFVVVLLGTGLMAYNANPIASSNQPHFGDYAAIVDGSKGGGLTGSNNGGTDKDGCNCGWGPMIHGKHGKNRQ |
| Ga0186231_116534 | Ga0186231_1165341 | F010973 | MTPFTSNYETIKEISLKDKSLDLTVISGDTTTLNQGKIHSSFLQSVLSNKLFVVLVVVVLGTGLMAYNANPVPASSQFRLGNYAAIVDGSKGGGLTSFENGEVEEGGNRNLCEPFGIKK |
| Ga0186231_118646 | Ga0186231_1186461 | F016355 | MPTENTVLKHVTPAGDSNTTDDMVILKSSTYQRFFLIVAGSILALLLWITVAGTTSGQHLQSSAHEIADDAVALAEYQVHSANLALTKDIFGASAVSSENDEGCYDCDNCAHVCCDSF |
| Ga0186231_119889 | Ga0186231_1198891 | F098601 | MGKPKSKKVVEEELALSKKDLKKVTKLEAQIPYHEGRGNKEEVTKIKNKVDAIWDKTCEAYAQSLL |
| Ga0186231_122057 | Ga0186231_1220571 | F010973 | TMAPFTSNYETIKETSSKDKSLDLAPISGNMTTPNQGKIQSTFLQSVRNNKFFVTLVAVVLATGIMAYNTNQVPSSNQFRVDNYAAIVDGSKGGGIIGSEYGVVTGGGCIDGTIWPTLPQGSKK |
| Ga0186231_122150 | Ga0186231_1221501 | F010973 | MTPFTSNYETIKETSSKDKSLDLALISGDMTIPSQGKIQSTFLQSVLSNKFTVAFVVVLLGTGLMAYNANPIASSNQPHFGDYAAIVDGSKGGGFTASENGNEDGGGSVNCPWPYHCRDEDPDPNLEIDSSF |
| Ga0186231_122152 | Ga0186231_1221521 | F010973 | MTPFTSNYETIKETSLEDKSLDTPSQGKVQSTFLQSVLSNKLVVAFVVVVLGTGLMAYNANPVPASSQFRLGNYAAIVDGSKGGGLTSFENGEVEEGGNRNLCEPFGIKK |
| Ga0186231_122558 | Ga0186231_1225581 | F010973 | IKETSSKDKSLDLALISGDMTIPSQGKIQSTFLQTVLSNTFIVVLVVIVLVTGLVAYNANPVPSSNQFRLGDYAAIVDGIKSGGITGSENGGETSDGLPKCHPTPSCKCWGCKGCPCWHF |
| Ga0186231_122963 | Ga0186231_1229631 | F038969 | SRSHGSVGPEQSGALSERPTRRKSALAFSPADIGGAATLLSMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMILGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCVNLCQRKLCGRMCPGI |
| Ga0186231_123553 | Ga0186231_1235531 | F016355 | MNTLNISHIAFQSTTKQLIMSNENTSLKIVTSAGDSNTTHEIVIGKSNTYQRPLLIVAGSLLALLVLIAVAGTNGGLHLQSSAHEIAEDAVALADYQV |
| Ga0186231_123700 | Ga0186231_1237001 | F038969 | SRSHGSVGPEQSGALSERPTRRKSALAFSPADIGGAATLLSMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMILGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGNCAEECALEFEELEAALHIKIPAAIQPGIVV |
| Ga0186231_124403 | Ga0186231_1244031 | F044273 | MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVVVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATIKFHTRDLTAHTIDITEDDNSAKIVCDLGPTHHNNKMNRE |
| Ga0186231_124662 | Ga0186231_1246621 | F010973 | PFTSNYETIKDTLSNNTSLDLAPTSDDMTTPSQGKIQSTFLQTVLSNTFIVVLVVIVLVTGLVAYNANPVPSSIQFRLGDYAAIVDGSKGGGIIGDENIVAGGDLYPIPGCPFDDGCIPL |
| Ga0186231_126043 | Ga0186231_1260431 | F058660 | MQYAQVFGRLMILGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALQFEELEASLNIAPAIQPAAIAV |
| Ga0186231_126171 | Ga0186231_1261711 | F038969 | SRSHGSVGPEQSGALSERPTRRKSALAFSPADIGGAATLLSMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEAALNMPTTTIQPAGIAV |
| Ga0186231_126970 | Ga0186231_1269701 | F016355 | MYASYCVQSSTNYLIVPTENTSLKNTTPAGDSNTSNKMVIGKINSYQRTLLIVAGSLLVLLVLIAVTDTTGGQQIQSSAHEFADGAVALAEYQV |
| Ga0186231_128610 | Ga0186231_1286101 | F017781 | WRLDGGFQQNDGSFSSNTFPSCRGPNTNTNIHMFGDWRNNAFISGPTYSALIAASSDITNAEAMIDAAGTELAGELPGSYYPRSWAMITNLMLNGAMESAGNTLKQ |
| Ga0186231_128848 | Ga0186231_1288481 | F038969 | SRSHGSVGPEQSGALSERPTRRKSALAFSPADIGGAATLLSMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECAEECALEFEELEASLAMPTTTIQPAAIAV |
| Ga0186231_129628 | Ga0186231_1296281 | F058660 | ELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALEFEELEASLNIAPAIQPAAIA |
| Ga0186231_129724 | Ga0186231_1297241 | F058660 | EELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALEFEELEAALNIHAPAIQPAAIAV |
| Ga0186231_129793 | Ga0186231_1297931 | F016355 | MPTENTSLKNTTPAGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSAHKMAKGVVALADYQVDSTNLALTKDIFGLGVVSENDEGSAGCCCGRGCTHPGCAWC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |