Sample 3300017340

Basic Information
IMG/M Taxon OID	3300017340 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211945 \| Ga0186233
Sample Name	Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 111 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0734)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	47232098
Sequencing Scaffolds	33
Novel Protein Genes	37
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	8
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South Atlantic Ocean
Coordinates	Lat. (^o)	-48.0	Long. (^o)	-16.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004251	Metagenome / Metatranscriptome	446	Y
F010973	Metatranscriptome	296	Y
F016355	Metatranscriptome	247	Y
F017781	Metagenome / Metatranscriptome	238	Y
F038969	Metatranscriptome	164	Y
F044273	Metagenome / Metatranscriptome	154	N
F053762	Metatranscriptome	140	N
F068121	Metagenome / Metatranscriptome	125	Y
F075633	Metatranscriptome	118	N
F083646	Metagenome / Metatranscriptome	112	N
F098600	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186233_107348	Not Available	1652	Open in IMG/M
Ga0186233_113621	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1092	Open in IMG/M
Ga0186233_115970	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	956	Open in IMG/M
Ga0186233_116029	Not Available	952	Open in IMG/M
Ga0186233_116048	Not Available	951	Open in IMG/M
Ga0186233_116279	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	938	Open in IMG/M
Ga0186233_117558	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	869	Open in IMG/M
Ga0186233_117697	Not Available	862	Open in IMG/M
Ga0186233_117980	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	849	Open in IMG/M
Ga0186233_118026	Not Available	847	Open in IMG/M
Ga0186233_118246	Not Available	836	Open in IMG/M
Ga0186233_118442	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	828	Open in IMG/M
Ga0186233_119055	Not Available	802	Open in IMG/M
Ga0186233_120272	Not Available	750	Open in IMG/M
Ga0186233_120413	Not Available	744	Open in IMG/M
Ga0186233_121371	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae	705	Open in IMG/M
Ga0186233_121996	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	682	Open in IMG/M
Ga0186233_122255	Not Available	673	Open in IMG/M
Ga0186233_122490	Not Available	665	Open in IMG/M
Ga0186233_122491	Not Available	665	Open in IMG/M
Ga0186233_122624	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	661	Open in IMG/M
Ga0186233_122715	Not Available	657	Open in IMG/M
Ga0186233_122750	Not Available	656	Open in IMG/M
Ga0186233_122950	Not Available	649	Open in IMG/M
Ga0186233_122995	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	648	Open in IMG/M
Ga0186233_123514	Not Available	631	Open in IMG/M
Ga0186233_123737	Not Available	624	Open in IMG/M
Ga0186233_123779	Not Available	623	Open in IMG/M
Ga0186233_125854	Not Available	558	Open in IMG/M
Ga0186233_126205	Not Available	549	Open in IMG/M
Ga0186233_126388	Not Available	544	Open in IMG/M
Ga0186233_126920	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	529	Open in IMG/M
Ga0186233_127933	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186233_107348	Ga0186233_1073481	F010973	MLCAVSKIFIMTPFTSNYETIKETSSKDKSLDLAVISGDMTTPNQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLVAYNANPVPSSNQINLQEYAASDDGIKSGGITGSENGGVTSGGFRCSTCSFS
Ga0186233_109904	Ga0186233_1099041	F083646	VYAYATDVNKRDATAEVYLLTDDETMWHITVTYKIIPYKVFDRFFPMSVDPSETGPWDPSKTLNPYLKGITTHITPQPLAHWNDSSVYQCKSHIAQAVPSMCAGHFDANPCFPVAFLCSHLFSIGAESVAELSGVSLPYTKRNTESVNEGNARNSVTIKDLVLDAQTLCMAGTYGLDVDCTTQYNPNHKDGPVYETILKATSDCAEKHDVATVKVTYALNEEIA
Ga0186233_113621	Ga0186233_1136211	F068121	MKQYGSDDDIEKRIGLSRKDHENRNMLNELPKGKITPSVDDPTIWKDEDGRPWKLNPDEIAVYHQPTNIVTAEIRAFVGKVIPSIRNPNLKFISPNADGRYSEVCANRYTGELVIEQQLIGTFNFAADAPNAMKDAKYPAHGEHERLDVTPHNEYGGKYKHIARDIPIGSLEKGPVILGLLEEEPV
Ga0186233_115166	Ga0186233_1151661	F016355	MYASYCVQSSTNYLIVPTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLVLLVLIAVTDTTGGQQIQSSAHEFADGAVALAEYQV
Ga0186233_115970	Ga0186233_1159701	F017781	VIIILFHYQPGSFRVMKDYQKSFPNNLRVGYNAVPQSEWTKLINTSHDVLRAVQCSNDGALVPNWATIGVSGGKIVHTGGGFSGSGTSQYEYGAEAARTTFRVALDAAFYPEKSSEWSPYLSSYNWRLDGGFQQNDGSFSSNTFPSCRGPNTNTNIHMFGDWRNNAFISGPTYSALIAASSDITNAEAMIDAAGTELAGELPGSYYPRSWAMITNLMLNGAMESAGNTLKQ
Ga0186233_116029	Ga0186233_1160291	F016355	MPTEKTSFQNTTPAGDSSTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSSDKIAEDAVALADYQVDSANLALTKDIFGVGTVSENEEAG
Ga0186233_116048	Ga0186233_1160481	F010973	MTPFTSNYETIKETSSKDKSLDLAVISGDMTTPNQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLVAYNANPVPSSNQINLQEYAASDDGIKSGGITGSENGGVTSGGFRCSTCSFS
Ga0186233_116279	Ga0186233_1162791	F038969	MVFVLLPIVVSMMSTAAIDAFSNKSAHQQQPLHSLSSRSIGHQSGSVRPTRRKSALSFSPADIGGAATLLSMKLDGATAIVNPTQVLTDASYVVMDPTKFFPDIQISQLRMQYAQVLGRLMILGTSFLPHHGIHPEEMAVQLFLLSVSMKPIIRSVQLYNCISKPAQGGLSDAEESVLSTLKSSKRHY
Ga0186233_117558	Ga0186233_1175581	F044273	MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATIKFHTRDLTAHTIDITEDDNSAKIVCDLGPTHHNKKMNREVINELKKN
Ga0186233_117697	Ga0186233_1176971	F016355	MPTEITSLMNTTPAGDRNTSTEVVIEKTNTYQRTFLIAAGSLLAFLVLIAVAGTSGGQHLQSSTHEIAEGAVALADYQVDSANLALAQDIFGENEEGCPCGGSFDCHCPSTPGPCTCSPYPNCCRSF
Ga0186233_117980	Ga0186233_1179801	F038969	SERPTRRKSALAFSPADIGGAATLISMKVNAVRGASAALSGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEAALNMPTTTIQPAGIAV
Ga0186233_118026	Ga0186233_1180261	F010973	MTPFASNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQTVLSNTFIVVLVVIVLVTGLVAYNANPVSSSNQFRLGHYAAIVDGNKGGGITGSKNGGVTIGGLPNWRPNWSKSF
Ga0186233_118246	Ga0186233_1182461	F016355	MPTEKTSFQNTTPAGDSSTTNEMVIGKINTYQRTFLIVAGSLLALLVVIAVAGTSGGQHLQSSAHKIAKGVVALADYQVDSTNLALTEDIFGLSAAKNDEGPYCRGCRCDPDMVIKCCGGHLCGSCDPKCCPGHCGSF
Ga0186233_118442	Ga0186233_1184421	F053762	MAFNSTQNNDQIPVAVAAPVEPVVKQEVMTYGEPTEFLIKNNWFGGGNAEITSNGEAVFQMIRMGGSVLFKNCELVINNISGEPILSMKEHTYGSGRAMELCRVDPSSPNPAMTAVPICRVVRNNCKLTLHNRYEVQLLGQTAENYSSSVDCNGNWPKSFTFEASGKELATVQKSSPKNWKLNVSAGGDVLLFIGIACAIDRMSHESKQRKAIIFGTAGAIGAIGAIGTAGN
Ga0186233_119055	Ga0186233_1190551	F016355	MPTEKTSFQNTTPAGDSSTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSSDKIAEDAVALADYQVDSANLALTKDIFGVGTVSENEKGAFCPPFVCLPLPCFYCSCDC
Ga0186233_120272	Ga0186233_1202721	F016355	MPTEKTSFQNTTPAGDSSTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSTHGIAKGAVALVDYQVDSANSALTKDIFGLDAVSENDEGKKWKPDYCCVAVPICCVPFDCCSF
Ga0186233_120413	Ga0186233_1204131	F010973	MTPFTSNYETIKETSSKDKSLDLAVISGDMTTPNQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLVAYNANPVPSSNQINLQEYAASDDGIKSGGITGSENGGVTSGGFRYWIGCLTINDYSCMIVT
Ga0186233_121371	Ga0186233_1213711	F075633	IGSKKSKDKLSKKASRTNSLTPTKLRDTIETSSLTDDSKNKGSLSHEKAINLDMDHVYVPLLHYIWALTFIGPQAGFLWVSGLCKLALRKWLCKVGIVHPKPYNPAEIVGRLCLEGTMSIHYSSMTKDKKIAGFSFSNFPTIDADGNAKICDLFVVYVNLETKCMVEAKLDDVVLTADEALILCWFNTIASNHVKLHALANWGINNEAEAWKHDSFVARSSLVTVMYNYFGYTCF
Ga0186233_121801	Ga0186233_1218011	F010973	MTPFTSNYETIKETYSKDKSLDVALISGDMTTPSQGKIQSTFLQTVLSNTFIVVLVVIVLVTGLVAYNANPVPSSNQFRLGDYAAIVDGIKSGGITGSENGGETSDGLPKCHPTPSCKCWGCKGWFVCGCFYEKTLLCMFAK
Ga0186233_121972	Ga0186233_1219721	F016355	MTNENTSLKNTTLAGDSNTTHGMVIGKSNTYQRTFLIVAGSLLALLVLIAVAGTSGDQHLQSSAHEIADYQVESANLALVKDIFGLAAVSENDEGPYGIVCLTRRDYVV
Ga0186233_121996	Ga0186233_1219962	F038969	SERPTRRKSALAFSPADIGGAATLISMKVNAVRGASAALSGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEASLNIHTPSIQPAAIAV
Ga0186233_122255	Ga0186233_1222552	F016355	MPTEITSLKITTPAGDYTTTNEMVIGKSNTHQRTFLIVIGSLLALLALIAVASTSGGNHLQSSTHGIAEGAVALADYQVDSANLALTKDIFGVGAGSQNAEGFFCGICPRNFCCKR
Ga0186233_122490	Ga0186233_1224901	F016355	MLNENTSLKNAATAGDSNTTNKMVIGKIITYQRTLLIVAGSLLALLVLIAVAGTSGGQHLQSSAYEIAEGAVALKDYQGDSANLALTNDIFGLGALSENDEGSSCPNVCSLFFFRCVFCS
Ga0186233_122491	Ga0186233_1224911	F010973	MTPFTSNYETIKETSLEDKSLDTPSQGKVQSTFLQSVLSNKLVVAFVVVVLGTGLMAYNANPVPASSQFRLGNYAAIIDGSKGGGFNDIENGVVTDGGAPWADFGKNKNKSKNPNKNSN
Ga0186233_122624	Ga0186233_1226241	F098600	ARVVLWWTCLIAVYFGRIVLITNGVIYAKSGLAYVSQTYDGLELREQQDDGNYTFPVLVPVITDAVIEDQFDGLLILAPFMGAAYTCVGVTSLVAAFLYRNVEASITLLLQAALLSMLGCIVRPHEPDDFYNEGEKDNVQNAQMVAVITGFIGAVGTIVALLLKQQIPTPIEYFLSLYNHIVVDNKDNKDDNVEEE
Ga0186233_122715	Ga0186233_1227151	F010973	MTPFTSNYETIKETLSKDKCRGVALTSGDMITPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLMAYNANPVPPTSQFRLGNYAAIVDGSKGGGFTGSKNGGELQDSGSGCYSCVQNDW
Ga0186233_122750	Ga0186233_1227501	F010973	MTPFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVRNNKFFVTLVAVVLATGIMAYNTNSVPSSNQFRVGNFAAIVDGSKGGGIIGSEYGVVTGGGCIDGTIWPTLPQGNKK
Ga0186233_122950	Ga0186233_1229501	F010973	PFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLVAYNANPVPSSNQFHLGDYASIVDGKGGGITGTENFGETDNGPHSAWPKHYSF
Ga0186233_122995	Ga0186233_1229951	F004251	QTTYKSNTKHTNTMVNSQQLQKETSKFLNKEVLAVGIFDVSLTAGKRNVAPVAAGLAAGLVTKHVQKKIIDKDNNKEYSMGNRFLTGAIGLATAAGTQQLMKHHDANKNGLTPIMIVAITKHKVYLLDWRGTHNNGKGPTETLFEFSRSKATIKNHTRKLVHHTVEIKEDGNHVKIECNLGATHSNKSMNREVIDLLKQN
Ga0186233_123514	Ga0186233_1235141	F010973	MTPFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLMAYNANPVPPTSQFRLGNYAAIVDGSKGGGFTGSKNGGELQDSGSGCYSCVQNDW
Ga0186233_123737	Ga0186233_1237371	F016355	MPTEKTSFQNTTPAGDSSTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSSDKIAEDAVALADYQVDSANLALTKDIFGVGTVSENEGGLLCCPSFVSCIPFCPSFVLCPC
Ga0186233_123779	Ga0186233_1237792	F016355	MSTENTSLKNTTPVGESNTTNKMVIWQLNTCQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSAYEIAEGAMALADYQVDSANLALTKDHFGLGVVSENDEGCCCS
Ga0186233_125854	Ga0186233_1258541	F010973	MTPFTSNYETIKETSLEDKSLDTPSQGKVQSTFLQSVLSNKLVVAFVVVVLGTGLMAYNANPVPASSQFRLGNYAAIVDGSKGGGFTGTKNGGASDSDFFVYL
Ga0186233_126205	Ga0186233_1262051	F010973	MAPFTSNYETIKETSLKDKSVDLARISGDMATPNQGKSQSTFLQSVLSNKFIGVLVVVVLGTYLMAYNAIPVPFSNQFRLGEYAAIVDGSNGGRITDPESKNLGGNCFWYFFLLFDKK
Ga0186233_126388	Ga0186233_1263881	F010973	MTSFTSNYETITKTLSKDQSLDLTPISGNMTTPTQGNIQSTFLQSVRSNKFFIALVVIVFGTGLMAYNANQVPSTQQFRLGDYAATVDGSKGGGGITGTENVDNDGLCCRGDPRGLY
Ga0186233_126920	Ga0186233_1269201	F038969	TTLNRHNAQQHSSGSERPTTRRKSALDFSPADIGGAATLLSLKVDAVRGGASGGAAQVLSDASYVVMDPHKFFPDIKISKLRMQYAQVFGRMMILGTTFLPHHGVHPEELAVQLYLLSMSMKPIIRSMQLYKCITSAKGDCAEECALEFQELEAALNIQPATTIAV
Ga0186233_127933	Ga0186233_1279331	F016355	MLNENTSLKNAATAGDSNTTNKMVIGKIITYQRTLLIVAGSLLALLVLIAVAGTSGGQHLQSSAYEIAEGAVALKDYQGDSANLALTNDIFGLGALSENDEGSCRPGYDCFFFCSSCFYCFGCSSSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017340: Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 111 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0734)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences