NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017321

3300017321: Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 36 psu salinity and 185 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0989)



Overview

Basic Information
IMG/M Taxon OID3300017321 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212194 | Ga0186482
Sample NameMetatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 36 psu salinity and 185 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0989)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41953514
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAtlantic Ocean: Baffin Bay
CoordinatesLat. (o)78.5922Long. (o)-74.4922Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020015Metagenome / Metatranscriptome226N
F021541Metagenome / Metatranscriptome218N
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F101267Metagenome / Metatranscriptome102N
F101269Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186482_114434All Organisms → cellular organisms → Eukaryota → Cryptophyceae897Open in IMG/M
Ga0186482_116175All Organisms → cellular organisms → Eukaryota → Cryptophyceae815Open in IMG/M
Ga0186482_116588All Organisms → cellular organisms → Eukaryota → Cryptophyceae795Open in IMG/M
Ga0186482_120918All Organisms → cellular organisms → Eukaryota → Cryptophyceae643Open in IMG/M
Ga0186482_123987All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales557Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186482_114434Ga0186482_1144341F032673FFFIWKMADYGSLPAAVEGAPVHPRRRAALLFAGVAALAAVAVLGCVFLVNQDDGMTTLAALNQQEMNAILSKASSMSTQQLSAEVSRLEMSKSLKSVKAVRMQSLVSQNSAANPEGGIYEDVPATVVGPIPGPPDWNGASAVVARLPNIGFAPSMLTEKGVETRGSFTARKSRAGESFYLRIYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGYKKIYIGKSQIQTQHIPRGIVGEFDIMTCRDMGNGEVQYFRIRYA
Ga0186482_116175Ga0186482_1161752F101267PSSRQVSRRDYRHIKMGCCSSRAPGSHEWQAQVPGSFKANPIPTVNKKQAIPADFFQKCYMKGYLRTLPKKQRIWCMIHENNFYFMDSAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVAEGPDEEKALEWYEASLKASSRRN
Ga0186482_116588Ga0186482_1165881F020015STMASTGSPPLALYGAVVTKPDGAGRRLRIVAVACVVALAVVCGVLLAVHTTDQEAGSQSLAGAYYAVAKPPAFNFNRFIKHAWFYNGHAVNPESELLVEKLAKKHHYKLEIHHLRTLKDNEFRAALFSEEVHCMVFAPLEHFPGFSELARTDLRGYVSAGNNVVFVGSYEYLSVMNDVFGFGLMSAYADGPYYRNDRTVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGNCMFDTMRVCVAFYVKYNLGTIVYLAFDYDQPN
Ga0186482_120918Ga0186482_1209181F101269MISMLDSVCIPAGHVGGGTLVAKCHSTAKGAPPTAKVNGWGPYFANDSHGYIAYGTGEYDGQGSGHSFGGDIWHPSHGYNNNCDGGRSHWSCDFRQA
Ga0186482_123986Ga0186482_1239861F021541LFLSSPSWLALTLLLSLQMFSTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186482_123987Ga0186482_1239871F036560AAVGQEAIAMLTEQLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
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