NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017316

3300017316: Metatranscriptome of marine eukaryotic communities from Southern California in marine media K with soil extract, 18 C, 36 psu salinity and 359 ?mol photons light - Rhodomonas abbreviata Caron Lab Isolate Isolate (MMETSP1101)



Overview

Basic Information
IMG/M Taxon OID3300017316 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211939 | Ga0186227
Sample NameMetatranscriptome of marine eukaryotic communities from Southern California in marine media K with soil extract, 18 C, 36 psu salinity and 359 ?mol photons light - Rhodomonas abbreviata Caron Lab Isolate Isolate (MMETSP1101)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size38436432
Sequencing Scaffolds21
Novel Protein Genes21
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae14
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27123

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Southern California
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F011850Metagenome / Metatranscriptome286Y
F019282Metagenome / Metatranscriptome230Y
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F026581Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F054914Metagenome / Metatranscriptome139N
F067806Metagenome / Metatranscriptome125N
F084315Metagenome / Metatranscriptome112N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N
F101269Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186227_102596All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta2120Open in IMG/M
Ga0186227_104923All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta1611Open in IMG/M
Ga0186227_106828All Organisms → cellular organisms → Eukaryota → Cryptophyceae1383Open in IMG/M
Ga0186227_107053All Organisms → Viruses → Predicted Viral1361Open in IMG/M
Ga0186227_108617All Organisms → cellular organisms → Eukaryota → Cryptophyceae1220Open in IMG/M
Ga0186227_110578All Organisms → cellular organisms → Eukaryota → Cryptophyceae1072Open in IMG/M
Ga0186227_110706All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1063Open in IMG/M
Ga0186227_112309All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712964Open in IMG/M
Ga0186227_114436All Organisms → cellular organisms → Eukaryota → Cryptophyceae851Open in IMG/M
Ga0186227_115056All Organisms → cellular organisms → Eukaryota → Cryptophyceae820Open in IMG/M
Ga0186227_115564All Organisms → cellular organisms → Eukaryota → Cryptophyceae797Open in IMG/M
Ga0186227_116384All Organisms → cellular organisms → Eukaryota → Cryptophyceae762Open in IMG/M
Ga0186227_117245All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712728Open in IMG/M
Ga0186227_117246All Organisms → cellular organisms → Eukaryota → Cryptophyceae728Open in IMG/M
Ga0186227_117579All Organisms → cellular organisms → Eukaryota → Cryptophyceae714Open in IMG/M
Ga0186227_117728All Organisms → cellular organisms → Eukaryota → Cryptophyceae708Open in IMG/M
Ga0186227_118688All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712673Open in IMG/M
Ga0186227_119534All Organisms → cellular organisms → Eukaryota → Cryptophyceae645Open in IMG/M
Ga0186227_121697All Organisms → cellular organisms → Eukaryota → Cryptophyceae573Open in IMG/M
Ga0186227_121825All Organisms → cellular organisms → Eukaryota → Cryptophyceae569Open in IMG/M
Ga0186227_124254All Organisms → cellular organisms → Eukaryota → Cryptophyceae504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186227_102596Ga0186227_1025963F096687VQFANLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186227_104923Ga0186227_1049231F096687SAAVLVMHTILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186227_106828Ga0186227_1068281F084315RGNAMAIQYGSVPSSTSPVVEPTAKSSRRPVMLYGAVAATALSVLAVIACLAFVAPKQDVPAELLTQDLVLFKMEPPPEPWSPPANLWMYWGEAPNKRFGHSGDNLRHLVKLGRLAGGEYRDPHFLFNYDSQTFRDLSEACCTAMLVTPMKNNMPIWNANSNVAQRLRNYVANGNHMIFSGGSLVSIEFINRYFWYNIEPVSATGIFKGSGYGNYSPGPFKKLIDDDLPWQYKLTPDTLFQDYTSVSSMDLRSLPSGTTVLYMTPKSSPVFMIKFCQRISEKHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVVDPHAPIAPPICK
Ga0186227_107053Ga0186227_1070531F026581MVAVYNTFGEVEAARPRDGFKKYAGALAGAWAVLFVAAVMIIGTADNNQESVLLQGAPTQMLAFKEFEPERNVFEEFDADFVPEKKFEYDLANEADFSKINIASGVEGSEVTEGIPDPYAVYHQLVVPEAVYTQPPPYDTTVVEIGEKIFGEPFHEYTAEEEGEAVMGKEYEDTIFDKTLNSVPEPNPSRDWEVLDVQNEPNPNY
Ga0186227_108617Ga0186227_1086171F010032RKRVMVTMSLRALNTISATLALGLVALAGWHMQNPQHFELFQTASEISAPQQTTELSFLQTSAFVDQIYMYAGLGVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186227_110578Ga0186227_1105781F032673MVLLADYGSLSQHVEFARQPRSRVSAMVSGVALLAALAIVGVVALNWDQDDGSVTLAALNKQEMDDILTKAKHMSTAQLRSEVAGLEMGKVAGSQSLVTVNENTAANPDGGVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTQHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186227_110706Ga0186227_1107061F010032HTSKRHATSSLAPPLAMLAPRVLNTITVSLALCLVALAGWHLHHPEHFELLGKSAAVQQTTELSFLQTSAFVDQIYMYAGLGVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186227_112309Ga0186227_1123091F096687MRCAAACSFQQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186227_114436Ga0186227_1144361F032673AEMVLIADYGSLPQSTQTSRSRSRAPVFVAGFAAVAALALVGFAAFADQDDGSVTLAALNQQEMQDLLSRASTMPTSQLRAEVAKLEASRTTSLVTVNDNTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186227_115056Ga0186227_1150562F025760MLFILPRQFLRNDPYSMYDTEASGNWYKADEPWGAYLQTDGNPAVSIAPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGVY
Ga0186227_115564Ga0186227_1155641F011850GAQTFLSSAIENVPFIDEVTGEAQGFTAPKNHFASVISLWVLFALPVWSAAYKQAGCDTPDWFGISQVNEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRTDIEIAAMDPARDTVVSSLYKGFGGALDKTAVYDEEDQLLILSDIVTFEETELGRRREKIAEEAGWYTGNPSFGRSLIEYSEQTRKGKRDVGTVTISTEELAKLRAEAAKN
Ga0186227_116384Ga0186227_1163841F025760LRRYDTKMGGNWYKADEPWGAYLQTEGNPAVTIHPYESDPSSGSFNPQAHTTWVPVDWSSWPNYNVHGYGVY
Ga0186227_117245Ga0186227_1172451F096687MQFDQLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186227_117246Ga0186227_1172461F101267RQNMGCCSSRAPGSHEWQAEVPGSHKANPVPTVNRKQEIPADFFTKCFMRGYLKTLPKKQRIWCMIHENNFYFMDNPEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFTAEDDAKALEWYEASLKASSRRN
Ga0186227_117579Ga0186227_1175791F101269VSNSTSTAMLENLFCIAAGKVGGGTLLAHCFPDHAAPESTQKVNGWGPFFANDSQGYIAYGTGNFDGQGSGHNFDGNVWHPSHGYVNNCDGARSHWSCDYRQA
Ga0186227_117728Ga0186227_1177281F067806MASPAVQVEDLGLSYGSRINSFSVEPRSGWRVRTASAALLVATVALVTLLALSDGQPEVTRMSLSASEMNGGTGGMAHSNGDATDFIDTADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKIDASGFYYLNIQGEPGHALKTILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186227_118688Ga0186227_1186881F019282MFALLKMTMLDDVNTINTWAEPHNANGVTPNTIIDSNDEPPCNNQQRMTIRGY
Ga0186227_119534Ga0186227_1195341F026478RSTPRIPLCAHLAPLILCSEQKPSKTMSKTALLVAVAVLLVVVIDSAKPKRKTVSVTDEDVVKARNFALAEIIKLSDSYRDMKINKVQSAETARSAFADGTNYFLKMELECTSLCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEEGRKDEL
Ga0186227_121697Ga0186227_1216971F025760MLFILPSNFLRNDPYSMYDTQASGNWYKADEPWGAYLQTDGNPAVSIAPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGY
Ga0186227_121825Ga0186227_1218251F054914PTSSCPTMQNNYGAAAVSSPAPVRRGAQLAFAFAIIAAALVCAVGIISYAKYTNALQPVSTLQFTKLGTEYQVASALMKHATDMQFDENSPVPENLADLAKAAEDEMKIDAEVMGTR
Ga0186227_124254Ga0186227_1242541F101269VSNSTSTAMLENLFCIAAGKVGGGTLLAHCFPDHAAPESTQKVNGWGPFFANDSQGYIAYGTGNFDGQGSGHNFDGNVWHPSHGYVNNCIRQIEA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.