NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017308

3300017308: Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in K medium w/o SiO2, 17 C, 30 psu salinity and 268 ?mol photons light - Hemiselmis andersenii CCMP 644 (MMETSP0043_2)



Overview

Basic Information
IMG/M Taxon OID3300017308 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212137 | Ga0186425
Sample NameMetatranscriptome of marine eukaryotic communities from Gulf of Mexico in K medium w/o SiO2, 17 C, 30 psu salinity and 268 ?mol photons light - Hemiselmis andersenii CCMP 644 (MMETSP0043_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size36025369
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae5
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationGulf of Mexico
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F020015Metagenome / Metatranscriptome226N
F026478Metagenome / Metatranscriptome197Y
F036560Metagenome / Metatranscriptome169N
F082776Metatranscriptome113N
F096687Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186425_103424All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii1743Open in IMG/M
Ga0186425_110820All Organisms → cellular organisms → Eukaryota → Cryptophyceae978Open in IMG/M
Ga0186425_112907All Organisms → cellular organisms → Eukaryota → Cryptophyceae864Open in IMG/M
Ga0186425_114393All Organisms → cellular organisms → Eukaryota → Cryptophyceae793Open in IMG/M
Ga0186425_115982All Organisms → cellular organisms → Eukaryota → Cryptophyceae723Open in IMG/M
Ga0186425_120721All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712564Open in IMG/M
Ga0186425_120968All Organisms → cellular organisms → Eukaryota → Cryptophyceae557Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186425_103424Ga0186425_1034242F036560RKMVFQTVFQTEELYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186425_110820Ga0186425_1108201F020015DAVWELMVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186425_112907Ga0186425_1129071F010032AMVSSRTLNTVSCAAALMCLALAVVHVRSSRPSTLFQESAVVPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186425_114393Ga0186425_1143931F082776RFIVMVATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS
Ga0186425_115982Ga0186425_1159821F020015AYYAVTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM
Ga0186425_120721Ga0186425_1207211F096687VGLVVRVLGLLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186425_120968Ga0186425_1209681F026478EIKMVGKTLLISLSLFLTLSLLVDAAKPKRKTVSIDDEETVKARDFALAEIIKLSDSYRDLKFNKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGEGKKTEL
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