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Sample 3300017289
3300017289: Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in K medium with artificial sea water, no silicate, 21 C, 35 psu salinity and 466 ?mol photons light - Isochrysis sp. CCMP1244 (MMETSP1388)
Overview
Basic Information
IMG/M Taxon OID 3300017289 Open in IMG/M GOLD Reference Gs0128947 | Gp0212083 | Ga0186371 Sample Name Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in K medium with artificial sea water, no silicate, 21 C, 35 psu salinity and 466 ?mol photons light - Isochrysis sp. CCMP1244 (MMETSP1388) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 38201435 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi 1 All Organisms → cellular organisms → Eukaryota 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location North Atlantic Ocean Coordinates Lat. (o ) 38.3048 Long. (o ) -69.6192 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F008013 Metagenome / Metatranscriptome 340 Y F009840 Metagenome / Metatranscriptome 312 Y F088199 Metatranscriptome 109 N
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186371_117895 Ga0186371_1178951 F008013 SRMSATQSARPSVQPDLTPSALSEPPESLLGAVQQAIFVEPYPNCKACGEVAGYISPFEVSPGCYKILAEDDDWITGVLTMAVGEKDLLHHHKDHLIYVLEGDGVTIYPGGDESAAMVVPLQVGAGIPAPMSAPPFAKHTLLNSGTVPLKMVFFEAKK Ga0186371_119672 Ga0186371_1196721 F009840 LRSASMRALSWLLLCSFRGTSALQPSRPGVSRRPLLQHALALGVLAPGAAAAAAEKKPSLKEVVAQLDAGTPKEERNAHGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP Ga0186371_124238 Ga0186371_1242381 F088199 GRSVHARNMVRCSCLVLALVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM
