NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017212

3300017212: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium w/o silicate, 4 C, 31 psu salinity and 521 ?mol photons light - Myrionecta rubra CCMP 2563 (MMETSP0798)



Overview

Basic Information
IMG/M Taxon OID3300017212 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212325 | Ga0186613
Sample NameMetatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium w/o silicate, 4 C, 31 psu salinity and 521 ?mol photons light - Myrionecta rubra CCMP 2563 (MMETSP0798)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size34196124
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27122

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004150Metagenome / Metatranscriptome450Y
F011303Metagenome / Metatranscriptome292N
F011561Metagenome / Metatranscriptome289Y
F012426Metagenome / Metatranscriptome280Y
F026478Metagenome / Metatranscriptome197Y
F039949Metagenome / Metatranscriptome162Y
F046194Metagenome / Metatranscriptome151Y
F073633Metagenome / Metatranscriptome120N
F074943Metatranscriptome119N
F086658Metagenome / Metatranscriptome110Y
F086664Metagenome / Metatranscriptome110N
F101267Metagenome / Metatranscriptome102N
F101270Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186613_102945Not Available1893Open in IMG/M
Ga0186613_104070Not Available1659Open in IMG/M
Ga0186613_105100Not Available1505Open in IMG/M
Ga0186613_105705Not Available1432Open in IMG/M
Ga0186613_105712All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii1431Open in IMG/M
Ga0186613_106139Not Available1378Open in IMG/M
Ga0186613_109613All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1066Open in IMG/M
Ga0186613_109878All Organisms → cellular organisms → Eukaryota → Cryptophyceae1048Open in IMG/M
Ga0186613_109934All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1045Open in IMG/M
Ga0186613_114563Not Available790Open in IMG/M
Ga0186613_115967All Organisms → cellular organisms → Eukaryota → Cryptophyceae734Open in IMG/M
Ga0186613_118098All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712651Open in IMG/M
Ga0186613_119875Not Available592Open in IMG/M
Ga0186613_122786All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186613_102945Ga0186613_1029453F039949LIVKTTIVVMMIAFITVRSSLVPLIEGLCAQIYFRFEISVVCSHLLLFFFVKEKTC
Ga0186613_104070Ga0186613_1040702F011561VKREATIAGLASEGLAMISGSAGAGSSAVVGPTPTDPVPVEFRKCGRDLKTLSAAQKHTNEERGGSRDPGVRRPGAGRGQLPARSKIWSSLFP
Ga0186613_105100Ga0186613_1051001F046194VHGERTEHARQPDGAQDSTITPSISGTGSLRETTRLQGQATSPYLRSKVYAARVKTCARRTTAHLHPCCALRTSLRASDSPDKAQHQLSPPKLRIPIPCYTSYNTISPSYTPLPGVMTALALRTSLILVVEFHAVCRCTICGAQADSEARIPGITMTARVDIFTNTVTSNPQISQPKFPNQICDSHPDSIEQTTNVHFIPPLTINKDKKNEVLKYKLTLSLRPL
Ga0186613_105705Ga0186613_1057051F012426MKLLYICTCVFLIYNILEYVYHSACDNKFSVQLDPYLVQRKYTFRIYVSKLITTQSSSPYKVVLVSTSMVIVIVLLIQHVNL
Ga0186613_105712Ga0186613_1057121F073633PQKMRRVVLLAVAGSAAAFLPVAPFGSTAPALKASSGLRLRSGRTSIKMVDWDYDKKEKEDNYDGPGSERGQINRSDEVGARSSERLANAKKNAQDGDLGSKSGLAKGNLKEGDRDPISGRLILDPLKIPTAEQGAPGTWAEYLAMRKLKEGGSARDFAGNVIDDVKPSYAVQDGTWGPPKDAKENVDDIFEKQPVSEKAPVFEVDAEMAARNAERASEDAKKQDEIESRMAKWMADAAAKKAAGN
Ga0186613_106139Ga0186613_1061391F086658MPSGNGQDGMMSALWEMGCEEDSDYHQVVGDGASGQGCGPLCQIRLVESQVRVIERAEKRSTPQG
Ga0186613_109613Ga0186613_1096131F011303MAPLSQAQVDTWVEDFMEAMQAPCDWKKLQELMNKRCTVEMPDEPKCKKFDDWKKKAEPFFNSFKAAKRTMPKGTRPIIVQSKKDEVEVIYAEQVKFTWTKGLEETYPNCTIVSGDKAKIFIYNRVLINGKGEGTWFQPVFSKNDFKMADREEDKDSLLDQIYEDFTATNERFADDMKVEFPVAGKMDKTQMFNLLSQFGDVTRSMMKGCPPVNMSTGKDEIFEGIVPAQYSFKWNTALNDTFKLELAHGADVVLSSYDCLKIQKGKVISFAPHFDAQVNIKPAGKSGAN
Ga0186613_109878Ga0186613_1098781F101267MGCCSSRAPGSHEWQANVPGSYKQNPVPIVNKKQEVPADFFQKCFMKGYLRTLPKKQRIWCMIHENNFYFMDSAEDTEPRKFFCFDGCLVKLNGKELEIQTAELMGGSVPRATYKFMAEDEDKALEWYEAALKASSRCN
Ga0186613_109934Ga0186613_1099341F011303PQALPRTLLESQTPAVTPVTAMAPLSQAQVATWVEDFMEAMQSPCDWKKLQELMNKRCTVEMPDEPKCKKFDDWKKKAEPFFNSFKAAKRTMPKGTRPIIVQSKKDEVEVIYAEQLKFTWTKGLEDTYPNCTIVSGDKAKIFIYNRVLINGKGEGTWFQPVFSKNDFKMADREEDKDSLLDQIYEDFTATNERFSDDMKVEFPVAGKMDKTQMFNLFSQFGDVTRSMMKGCPPVNMSTGKDEIFEGIVPAQYSFKWNTALNDTFKLELAHGADVVLSSYDCLKIQKGKVISFAPHFDAQVNIKPVGKSGAN
Ga0186613_114563Ga0186613_1145631F074943MNMADETVSMMNDAIASQGSDIDESQRQIKRLLEENLEIWKANLKE
Ga0186613_115967Ga0186613_1159671F026478RILTLVAVFLLALLALATVEGAKPKRKQVGVTDEEVVKAKEFALAEIVKLSDSYRDMKITKVISAETARSAFADGTNFFLKMELECKSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEEDAAKDEL
Ga0186613_118098Ga0186613_1180981F101270MRFTKLMMSMLPAVEPWVVPGENVMNPGGVENVNPLDTLSSEYHPWGVRIAPLEYGATDYAQFGEVCGSEGPEGGEWAC
Ga0186613_119875Ga0186613_1198752F004150FEVKIAFIIARKRNIVVVLFGTLKVQSFMLTEVRDCDLLIVVTSSTFLKRKDMLKEKSS
Ga0186613_122786Ga0186613_1227861F086664EISPFKVGQIQKLLSDVSKDALPELGGQIAPYFAVVQIVFLMMFLAYFVLGVVSVAVDFDAMDCACAEDSWIWLYVLLVIVIPTSMGVVMGFIKGAMAAADLEAKLGFDTAIFTALPPPVLYITFGILGIVLWANMTEECGDFYSGSHGLLFVIFHIQVVIMSIASIF
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