NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017208

3300017208: Metatranscriptome of marine eukaryotic communities from unknown location in Ukeles E medium, at 18 C, 15 psu salinity and 512 ?mol photons light - Rhodomonas lens RHODO (MMETSP0484_2)



Overview

Basic Information
IMG/M Taxon OID3300017208 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211775 | Ga0186063
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in Ukeles E medium, at 18 C, 15 psu salinity and 512 ?mol photons light - Rhodomonas lens RHODO (MMETSP0484_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size37160870
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae11
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F020015Metagenome / Metatranscriptome226N
F021541Metagenome / Metatranscriptome218N
F026478Metagenome / Metatranscriptome197Y
F026581Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F054914Metagenome / Metatranscriptome139N
F067806Metagenome / Metatranscriptome125N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186063_108360All Organisms → cellular organisms → Eukaryota → Cryptophyceae1246Open in IMG/M
Ga0186063_111927All Organisms → cellular organisms → Eukaryota → Cryptophyceae999Open in IMG/M
Ga0186063_113678All Organisms → cellular organisms → Eukaryota → Cryptophyceae898Open in IMG/M
Ga0186063_113786All Organisms → cellular organisms → Eukaryota → Cryptophyceae892Open in IMG/M
Ga0186063_113820All Organisms → cellular organisms → Eukaryota → Cryptophyceae890Open in IMG/M
Ga0186063_116156All Organisms → cellular organisms → Eukaryota → Cryptophyceae774Open in IMG/M
Ga0186063_116233All Organisms → cellular organisms → Eukaryota → Cryptophyceae770Open in IMG/M
Ga0186063_116348All Organisms → cellular organisms → Eukaryota → Cryptophyceae765Open in IMG/M
Ga0186063_117724All Organisms → cellular organisms → Eukaryota → Cryptophyceae705Open in IMG/M
Ga0186063_118663Not Available667Open in IMG/M
Ga0186063_122448All Organisms → cellular organisms → Eukaryota → Cryptophyceae536Open in IMG/M
Ga0186063_123591All Organisms → cellular organisms → Eukaryota → Cryptophyceae502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186063_108360Ga0186063_1083601F084315AMAIQYGTVPADPAAKPSRRPAMLYGAVATAALAVLVVVACLGFMTPKQDAPAELLTQDLVLFKMEPPPEPWSPPANLWMYWGGSPNKRFGHSGDNLRHLVKLGRLAGGEYRDPHFLFTYEAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNVAQRLRNYVANGNHMIFTGGSLVSMEFINRYFYYNMEPIDAQGIFKGSGYGNWSPGPFRKLIDDDLPWQYKLTPDTLYQDHISVTSMGLRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGYPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQQDPDVSETFSPNCKQPPKVVEDPHAPHAPPIC
Ga0186063_111927Ga0186063_1119271F010032LEMLSLRALNTISLCLALGLVALAGWHMQNPQHFELFQTSAAKAAPQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186063_113678Ga0186063_1136781F020015AYGAAAPVSAMSVQKPKRTWQTKVAVGSALVLAAVACVVLLGEDAVNQTASNEAALALGGSYYAVTKPPAFNFNRFIENAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGISGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYVKYNLGTIVYIAFNYDTPYGIGHWDQILHAGMMM
Ga0186063_113786Ga0186063_1137861F032673RSVRTMVLLADYGSLSHDIERQPRSRVSAMVAGVAMIAALALVGVVALSWTQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEVNKLVKAPMQSLVTVNENTAANPDGAVMENVPATVVGPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186063_113820Ga0186063_1138201F087277AMAKMERLDLEASPSLAPYSPPAQPRAGMNEMQRQVRKAFLVVATMAALFAVAVVVLTAAPAQGEQRPISSSERWLEDGRASLNMFRVARTPMQKKALRGPDLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFNPQYNLQVRLDAIHTALGQLAEQTGVYLTNPPVVKVDESVFDEAATDVSRFRKLVERIPHMHNAQYYWVVQYNVIRTELRKASSQLTEVVNEAKHHFLEVADSIDSMRLNMEAIHQ
Ga0186063_116156Ga0186063_1161561F026478VKVSLKLPLSLILLRRLRRIDFSMARFLLFLTAALCLLAVIDSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELQCTSLCAAPLSPASTCRRGQYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEKKDEL
Ga0186063_116233Ga0186063_1162331F026581VAVYNTFGEVEAARPARDGFKKYAGALAGAWAVLFVAAVMIIGTSNNASPTMLAFKEFEPERNVFETFDADFTPEMKFEYDLANEADFAKLNIASGVEGSTVTEGIPDPYAVYHGLTVPEAVYTNPPPYDTSVVEIGEKVFGEPFHEYTAEEEGEAVMGKAYEDTIFDKTLNSVPEPNPSRDWEILDTLNSPLPNY
Ga0186063_116348Ga0186063_1163481F067806ATASPAMAVEDLGLSYGSRVNSFEMERRSGWRVRTAGVALAVATVAMVALLALGSDQHQEVTRASLSVREMNGGTGMAHSNGDASDFIDTADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKIDASGFYYLNVQGEPGHALKTILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186063_117724Ga0186063_1177241F020015GGILSDGEGARGSELSASYFAVSKPKAFNFNRFIDKVWFYDGRAASRDEEGFLEKIARRHHYKLQIHRLPMFKDNVFRAALFSEDIRCMVFPPLVHFPGIGELAQKDLRGYVSAGNNAVFVGSYEWLSIMNDVFGFQLQSSYVDGPYYRNDRTVKGTPFQWSRSMLEQPDGSVYGVKVNSVPMDGNCMFDTMGTCVVFYVKYNLGTVCYVAFAYDTPYGIGHWDQILHAAMMM
Ga0186063_118663Ga0186063_1186632F021541MFSVLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVR
Ga0186063_122448Ga0186063_1224481F101267TSPPPHHTMGCCSSRPPGAHEWQSQVPGSYKENPIAFVNKKNEVPADFFNKVYMKGYLKTMPKKQRIWCMIHENNFYFMDNAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFIAEDEAKALEWYENSLKASSRRN
Ga0186063_123591Ga0186063_1235912F054914SAMQNHYGAAVSSPAPARRGPQLAFAFAIIAAALVCAVGIISYAKYTNALQPVAMVTTKLGDEFMVASALMKHATDMSFDENAPVPEKLADLAKAAEDEMKIDAEVMGTR
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