NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017198

3300017198: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 601 ?mol photons light - Rhodomonas salina CCMP 1319 (MMETSP1047)



Overview

Basic Information
IMG/M Taxon OID3300017198 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211885 | Ga0186173
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 601 ?mol photons light - Rhodomonas salina CCMP 1319 (MMETSP1047)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size37503095
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae10
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27126

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005668Metagenome / Metatranscriptome393Y
F010032Metagenome / Metatranscriptome309N
F011850Metagenome / Metatranscriptome286Y
F019282Metagenome / Metatranscriptome230Y
F020015Metagenome / Metatranscriptome226N
F023110Metagenome / Metatranscriptome211Y
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F054914Metagenome / Metatranscriptome139N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F092159Metagenome / Metatranscriptome107N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186173_106491Not Available1463Open in IMG/M
Ga0186173_108089All Organisms → cellular organisms → Eukaryota → Cryptophyceae1299Open in IMG/M
Ga0186173_109955All Organisms → cellular organisms → Eukaryota → Cryptophyceae1148Open in IMG/M
Ga0186173_110274All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta1123Open in IMG/M
Ga0186173_110905All Organisms → cellular organisms → Eukaryota → Cryptophyceae1079Open in IMG/M
Ga0186173_112611All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales969Open in IMG/M
Ga0186173_113459All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis919Open in IMG/M
Ga0186173_113671All Organisms → cellular organisms → Eukaryota → Cryptophyceae907Open in IMG/M
Ga0186173_113770All Organisms → cellular organisms → Eukaryota → Cryptophyceae901Open in IMG/M
Ga0186173_113771All Organisms → cellular organisms → Eukaryota → Cryptophyceae901Open in IMG/M
Ga0186173_115186All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712826Open in IMG/M
Ga0186173_115531All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712809Open in IMG/M
Ga0186173_115614All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712805Open in IMG/M
Ga0186173_115988All Organisms → cellular organisms → Eukaryota → Cryptophyceae786Open in IMG/M
Ga0186173_119285All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712645Open in IMG/M
Ga0186173_120876All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712584Open in IMG/M
Ga0186173_121131All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712575Open in IMG/M
Ga0186173_122119All Organisms → cellular organisms → Eukaryota → Cryptophyceae543Open in IMG/M
Ga0186173_122489All Organisms → cellular organisms → Eukaryota → Cryptophyceae531Open in IMG/M
Ga0186173_122587All Organisms → cellular organisms → Eukaryota → Cryptophyceae528Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186173_106491Ga0186173_1064912F005668LFASSDVRFRYFQEMFALLFDLEDYATTYRATRDAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
Ga0186173_108089Ga0186173_1080892F084315MAIQYGTVPADPAAKPSRRPAMLYGAVATAALAVLVVVACLGFMTPKQDAPAELLTQDLVLFKMEPPPEPWSPPANLWMYWGGSPNKRFGHSGDNLRHLVKLGRLAGGEYRDPHFLFTYEAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNVAQRLRNYVANGNHMIFTGGSLVSMEFINRYFYYNMEPIDAQGIFKGSGYGNWSPGPFRKLIDDDLPWQYKLTPDTLYQDHISVTSMGLRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGYPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQQDPDVSETFSPNCKQPPKVVEDPHAPHAPPICK
Ga0186173_109955Ga0186173_1099551F020015TMAYGAAAPVSAMSVQKPKRTWQTKVAVGSALVLAAVACVVLLGEDAGNQTASNEAALALGGSYYAVTKPPAFNFNRFIENAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGISGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYVKYNLGTIVYIAFNYDTPYGIGHWDQILHAGMMM
Ga0186173_110274Ga0186173_1102741F092159SNQISAMVWSVETGKDNNDAIGSAHNYQQTTMLNWANLSERAQKIKGLNFCASQFVTEDEVKYCVAKLFSGDIKFATPADY
Ga0186173_110905Ga0186173_1109052F010032RAAALEMLSLRALNTISLCLALGLVALAGWHMQNPQHFELFQTSAAKAAPQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186173_112611Ga0186173_1126111F036560MKCTGKNADDVVVQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186173_113459Ga0186173_1134591F011850TVLVLACSLLLFAPSSHAFAPAGVARVGMPLRGKSVSARSARVTPAKMAMDPSQLSHIADGAQTFLSTLDTVPFIDEVTGEPQGFTSPKNHFASVIGLWVLFALPVWSAAYKQAGCTTPDWFGVSQVAEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRADLDRDAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETDLGRRREAIAEASGWYTGNPSFGRSLIEYSEQTRKGKRDQGTVTISTEELAKLRAEAAKK
Ga0186173_113671Ga0186173_1136711F087277MAKMERLDLEASPSLAPYSPPAQPRAGMNEMQRQVRKAFLVVATMAALFAVAVVVLTAAPAQGEQRPISSSERWLEDGRASLNMFRVARTPMQKKALRGPDLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFNPQYNLQVRLDAIHTALGQLAEQTGVYLTNPPVVKVDESVFDEAATDVSRFRKLVERIPHMHNAQYYWVVQYNVIRTELRKASSQLTEVVNEAKHHFLEVADSIDSMRLNMEAIHQ
Ga0186173_113770Ga0186173_1137701F032673RCRSVRTMVLLADYGSLSHDIERQPRSRVSAMVAGVAMIAALALVGVVALSWTQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEVNKLVKAPMQSLVTVNENTAANPDGAVMENVPATVVGPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186173_113771Ga0186173_1137711F010032LAPRVLNTITISLALCLVALAGWHVSHPETFELLGAKSAAPQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLLWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186173_115186Ga0186173_1151861F096687VVQFNTLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186173_115531Ga0186173_1155311F096687VVQFNTLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186173_115614Ga0186173_1156141F096687MFGLGWVQQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186173_115988Ga0186173_1159881F026478KIRVKVSLKLPLSLILLRRLRRIDFSMARFLLFLTAALCLLAVIDSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELQCTSLCAAPLSPASTCRRGQYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEKKDEL
Ga0186173_119285Ga0186173_1192852F019282MFAILKMTMLDDVNTINTWAEPHNANGVTPNTVIDSNDEPPCNNQQRMTIRAY
Ga0186173_120876Ga0186173_1208761F023110MRCPRGFKIVKAASMLDDAPWEWGSTGGWSQGMPEFFHGMPGKGAEGVYANIYDELDDSPVTWHITEPVDPTEYQNEWLGDVINIY
Ga0186173_121131Ga0186173_1211311F005668LFDLEDYAGTYRETRNAYLKAANQLKLATGPYKAARDAYVAATATYTKSLYE
Ga0186173_122119Ga0186173_1221191F101267FTSPPPHHTMGCCSSRPPGAHEWQSQVPGSYKENPIAFVNKKNEVPADFFNKVYMKGYLKTMPKKQRIWCMIHENNFYFMDNAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFIAEDEAKALEWYENSLKASSRRN
Ga0186173_122489Ga0186173_1224891F025760MFFVVPMSFLRNDPYSMYDTKASGNWYKADEPWGAYLQTDGNPAVSIHPYESDPSSGSSNPQAHTTWVPVDWNSWPNYNVHGYGIY
Ga0186173_122587Ga0186173_1225871F054914SAVSAMQNHYGAAVSSPAPARRGPQLAFAFAIIAAALVCAVGIISYAKYTNALQPVAMVTTKLGDEFMVASALMKHATDMSFDENAPVPEKLADLAKAAEDEMKIDAEVMGTR
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