NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017193

3300017193: Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron w/o nitrate, 25 C, 35 psu salinity and 463 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0973)



Overview

Basic Information
IMG/M Taxon OID3300017193 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211956 | Ga0186244
Sample NameMetatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron w/o nitrate, 25 C, 35 psu salinity and 463 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0973)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32345451
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica7

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSargasso Sea
CoordinatesLat. (o)33.1833Long. (o)-65.25Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076756Metagenome / Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186244_108998All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1285Open in IMG/M
Ga0186244_109052All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1278Open in IMG/M
Ga0186244_110251All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1152Open in IMG/M
Ga0186244_111059All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1077Open in IMG/M
Ga0186244_112477All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica951Open in IMG/M
Ga0186244_113550All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica865Open in IMG/M
Ga0186244_116305All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica664Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186244_108998Ga0186244_1089981F076756MDQDQKMEGLDNSNGGELDESDSQSVTVSELGMMNRVAGISKRMQNSRMSMVSATLTISDFPVEIQGILSEAFDPDGDGHISTDELVEGAKISIQTRKFNRMLWKGLAVAIFVVLALVGLNAGLTYGIVDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_109052Ga0186244_1090521F076756MSQAIAPIAPIENDEHEFMKSHLSVVSSALAISNFPVEVQGILTNAYDDDGDGHISTKELVEGARIKIRTEKYNRILWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_110251Ga0186244_1102511F076756MPEDTNDHEFMKSHLSVVSSALAISNFPVDVQGILSNAYDDDGDGHISTNELVEGARLKIRTEKCNSMLWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_111059Ga0186244_1110592F076756MSQAIAPIAPIENDEHEFMKSHLSVVSSALAISNFPVEVQGILTNAYDDDGDGHISTKELVEGARIKIRTEKYNRILWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
Ga0186244_112477Ga0186244_1124771F076756MPEDTNDHEFMKSHLSVVSSALAISNFPVDVQGILSNAYDDDGDGHISTNELVEGARLKIRTEKCNSMLWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
Ga0186244_113550Ga0186244_1135501F076756GILTNAYDDDGDGHISTDELVEGARIKMRTEKCNRILWRGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_116305Ga0186244_1163051F076756GILTNAYDDDGDGHISTDELVEGARIKMRTEKCNRILWRGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
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