NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017190

3300017190: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium with seawater, 5 C, 35 psu salinity and 129 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0907)



Overview

Basic Information
IMG/M Taxon OID3300017190 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212324 | Ga0186612
Sample NameMetatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium with seawater, 5 C, 35 psu salinity and 129 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0907)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size38560270
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11023

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Ocean
CoordinatesLat. (o)-48.1Long. (o)-24.25Alt. (m)N/ADepth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004251Metagenome / Metatranscriptome446Y
F010973Metatranscriptome296Y
F015298Metagenome / Metatranscriptome255Y
F016355Metatranscriptome247Y
F038969Metatranscriptome164Y
F044273Metagenome / Metatranscriptome154N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186612_110547Not Available1175Open in IMG/M
Ga0186612_111737Not Available1080Open in IMG/M
Ga0186612_113901Not Available931Open in IMG/M
Ga0186612_114477Not Available894Open in IMG/M
Ga0186612_114769All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta878Open in IMG/M
Ga0186612_114817All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta875Open in IMG/M
Ga0186612_115962Not Available808Open in IMG/M
Ga0186612_116183Not Available795Open in IMG/M
Ga0186612_116416All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102783Open in IMG/M
Ga0186612_116498All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102778Open in IMG/M
Ga0186612_116900Not Available758Open in IMG/M
Ga0186612_118534All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102676Open in IMG/M
Ga0186612_118662Not Available669Open in IMG/M
Ga0186612_119499Not Available631Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186612_110547Ga0186612_1105471F010973MLCAVNKNSTMTPFASNYETIKETSSKDKSHDLALISGNMTIPSQGKIQSTFLQSVLSNKFFVVLVVVVLGTGLVAYNANPVPSSIQFRLGHYAAIVDGNTGGGITGSKNGGVTIGGLPNWRPSHKSF
Ga0186612_111737Ga0186612_1117371F010973MTPLTSNYETIKETSLEDKSLDTPSQGKVQSTFLQSVLSNKLVVAFVVVVLGTGLMAYNANPVPASSQFRLGNYAAIVDGSKGGGLTGSENGGELQDSGSGCYSCVQNDW
Ga0186612_113901Ga0186612_1139011F016355MPTENTSLKNTTPVGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSADKIAEDAVALADYQVDSANLALTKDIFGVGTVSENEEGDNNPCFCPGCGFCLVPLCGC
Ga0186612_114477Ga0186612_1144771F010973MAPFTSNYETIKDTLSNNTSLDLAPTSDDMTTPSQGKIQSTFLQSVLSNKFFVVLVVVVLGTGLVAYNANPVPSSIQFRLGDYAAIVDGSKGGGIIGDENIVAGGDLYPIPGCPFDDGCIPLE
Ga0186612_114769Ga0186612_1147691F015298VRLRKYKQRDNYLYCIIMNGILDYLITHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPNAKEKIEDDASSSLSSSSSNKTVLDLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL
Ga0186612_114817Ga0186612_1148171F015298INRTIAKIQATRQLITMNGILDYLIKHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPNAKEKIEDDASSSLSSSSSNKTVLDLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL
Ga0186612_115962Ga0186612_1159621F016355MPTENTSLKNTTPAGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGIQHLQSSVYEITEGAVALKDFQDDSANLALTNDIFGLGAVSENDEG
Ga0186612_116183Ga0186612_1161831F010973MTPFTSNYETIKETSLKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVILGTGLMAYNANPVPPASQFRLGDYAAIVDGSKGGGLTGSNNGGTYKDGARLGNHPE
Ga0186612_116416Ga0186612_1164161F004251MVNSQQLQNDTSKFLNEDVLAVGIFDVSLTAGKRNVAPVAAGLAAGLITKHVQKKIINKDDDKEYSMKNRMLTGAIGLVTAAGTQQIMKHHDANKNGLTPIMIVAVTKHKVYLLDWKGTHNMGKGPTETLFEFSLSKATIKNHTRKLVHHTVEINEDGNHVKIECNLGATHSNKKMNREVIDLLKQN
Ga0186612_116498Ga0186612_1164981F004251YGTSLKAKEYYACHIITKQTKEKHTSKQNYTTKSNTKMVNSEELKEETALFLKKDVLAVGIFDVSLTGGKRIVAPAAAGLAAGLITKHIQKNVIDKKNEGDEEDDKKEYSMGNKFLTGAIGLATAAGTQQLMKSHDAKKSGLTPIMIVAITKNTVYLLDWKGTHNKGKGPTEILDEFNLNKATIKNHTRGLVHHTIDIKEDGNHAKIECNLGATHSNKEMNREVIKLLKETN
Ga0186612_116900Ga0186612_1169001F010973MTPFASNYETIKETSSKDKSHDLALISGNMTIPSQGKIQSTFLQSVLSNKFFVVLVVVVLGTGLVAYNANPVPSSIQFRLGHYAAIVDGNTGGGITGSKNGGVTIGGLPNWRPSHKSF
Ga0186612_118534Ga0186612_1185341F044273MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIQNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATMKFHTRDLTAHTIDITEDGDSAKIVCDLGPTHHNKKMNREVINELKKN
Ga0186612_118662Ga0186612_1186621F016355MPTENTSLKNASPALDSNASNNMVIGKINTYQRTFLIVAGSLLALLVLIAVAGTSGVQHLQSSTYEIAEGAVALTDYQVDSANLALTKDIFGTSAVSSENDEGNIRCLSWCCDGPLGCGCFCA
Ga0186612_119499Ga0186612_1194991F038969ASTTTVTRHNNAPHEAQHEQSSRSVGSERPTRRSKSALACSPADIGGAAATLLSMKMDGAKAIVNPTQVLTDASYVVMDPNKFFPDLQISKLRRQYAQVFGRLMVLGTTFLPHHGVHPEEMAVQLFLLSVSMKPIIRSVQLYQCITSAKGDCAEECAFEFEELEAALNIKTSPAIV
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