Sample 3300017189

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300017189

3300017189: Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in F/2 medium with seawater, 0.4uM PO4, 20 C, 35 psu salinity and 383 ?mol photons light - Thalassiosira rotula GSO102 (MMETSP0910)

Overview

Basic Information
IMG/M Taxon OID	3300017189 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212378 \| Ga0186666
Sample Name	Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in F/2 medium with seawater, 0.4uM PO4, 20 C, 35 psu salinity and 383 ?mol photons light - Thalassiosira rotula GSO102 (MMETSP0910)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26040402
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	48.629353	Long. (^o)	-122.957542	Alt. (m)	N/A	Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067805	Metagenome / Metatranscriptome	125	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186666_114165	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	605	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186666_114165	Ga0186666_1141651	F067805	MGRKQQPKEEELTLSKKEQKKVDKLTAQIPYHQGRGNMEEVTKIKEQIDSIWEKAKEAQF

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