NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017172

3300017172: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 284 ?mol photons light - Proteomonas sulcata CCMP 704 (MMETSP1049)



Overview

Basic Information
IMG/M Taxon OID3300017172 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211886 | Ga0186174
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 284 ?mol photons light - Proteomonas sulcata CCMP 704 (MMETSP1049)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35781073
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27127
Not Available4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005668Metagenome / Metatranscriptome393Y
F021541Metagenome / Metatranscriptome218N
F023110Metagenome / Metatranscriptome211Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F067806Metagenome / Metatranscriptome125N
F087277Metagenome / Metatranscriptome110N
F097384Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186174_110503All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121195Open in IMG/M
Ga0186174_112341Not Available1067Open in IMG/M
Ga0186174_112810All Organisms → cellular organisms → Eukaryota → Cryptophyceae1038Open in IMG/M
Ga0186174_113097All Organisms → cellular organisms → Eukaryota → Cryptophyceae1020Open in IMG/M
Ga0186174_113171All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1015Open in IMG/M
Ga0186174_113476All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712996Open in IMG/M
Ga0186174_114455Not Available936Open in IMG/M
Ga0186174_114883All Organisms → cellular organisms → Eukaryota → Cryptophyceae912Open in IMG/M
Ga0186174_115036All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712904Open in IMG/M
Ga0186174_115130All Organisms → cellular organisms → Eukaryota → Cryptophyceae898Open in IMG/M
Ga0186174_115171All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae896Open in IMG/M
Ga0186174_115912All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712855Open in IMG/M
Ga0186174_116403Not Available830Open in IMG/M
Ga0186174_116608All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712819Open in IMG/M
Ga0186174_117175All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712790Open in IMG/M
Ga0186174_117817All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712757Open in IMG/M
Ga0186174_119825Not Available664Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186174_110503Ga0186174_1105031F023110MLPKMVRFMSLGAAEDDPWVWTSSWNSDMPAFFSGMPNGVMDNIYDDLDDSPQIWGHSAPVDPTEYQNEYIGQVIGIY
Ga0186174_112341Ga0186174_1123413F036560VPQQKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186174_112810Ga0186174_1128101F026478PQPLSPSAPQMKVLRVAAILAIVACSSAAKPKRKAIDLNDENVVKAKDFALAEIIKLSDSYRDMKINKLMTAETARSAFADGTNYFLKMELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEDSKKDEL
Ga0186174_113097Ga0186174_1130971F087277AMAIGAMQAPIASPAPYNPVHPNSKPAQAHRIRIAFAAMATLAALLATVCVVLQSSTAEPGPVVAGEDRWLEDGRASLSLFRVARTPMQKKLLDGHSLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYELQVQLDAIHTSLDQLADQTGVYLTNPPVVQVDESVFDQAATDVSRFRKLVERIPEMHNAGYYWVVQYNVIRTELRKASAQLTQMVNMAKHHFLEVADSIDSMRMNVEAIHE
Ga0186174_113171Ga0186174_1131711F036560MIENLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRR
Ga0186174_113476Ga0186174_1134762F021541MFSVLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNRSVNTVFPLSAFFQGA
Ga0186174_114455Ga0186174_1144552F021541MFSVLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVSLFLPVWC
Ga0186174_114883Ga0186174_1148831F067806AAMASPSLEAPSLGLAHNSFSLERRPNWRVRAAISLAVATVALIALVAVGGEAPEHDRVSLSLQGLSHNPSSDAMNGGTSGVTAHNGDASDFIDTADLGDYVDAIIGPAPTGLTDGGFKKRGSIAVSKVDASGFYYLNIQGEPGHALKCILQGSDGYHRHWKGKCQANRHRIVQQHRDSVDPPA
Ga0186174_115036Ga0186174_1150362F021541MFSVLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNR
Ga0186174_115130Ga0186174_1151301F032673KAYGALEAPQSSDSATQGSKWRSPMYLAAAAAGLAAIAIVCSVALMGFDNDDGSVTLAAFNKQQMDDILAKANKMSTSQLRELVGNLEAGKGMKIAAGTSSLATVNENTAAQPDGAIMENVPATVVAPVPGPPDFNGASAVIARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRIYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYVGKSQIQTGHVPRGIPGEFDIMTCRDLGNGEVQYFRMRYD
Ga0186174_115171Ga0186174_1151711F097384VPGVLQQVRLFTSLDDATVRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVVRYDMGTVCYVGYNYNTPFHADQWTRVLHCAVKM
Ga0186174_115912Ga0186174_1159121F021541LLNSNSLVQMFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186174_116403Ga0186174_1164032F021541MFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVSSVLTSNILRFV
Ga0186174_116608Ga0186174_1166081F021541LLNSNSLVQMFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNRSDQLQIP
Ga0186174_117175Ga0186174_1171751F021541MFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNR
Ga0186174_117817Ga0186174_1178171F021541MFQSLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYF
Ga0186174_119825Ga0186174_1198251F005668MLTWMFLSREMFSLLFDLEDYATTYRATRDAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
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