Sample 3300017156

Basic Information
IMG/M Taxon OID	3300017156 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212315 \| Ga0186603
Sample Name	Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 358 ?mol photons light - Corethron pennatum L29A3 (MMETSP0171)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 358 ?mol photons light - Corethron pennatum L29A3 (MMETSP0171)

Sequencing Status

Permanent Draft

Sequencing Center

National Center for Genome Resources

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	37235779
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	2

Dataset Contents

Total Genome Size

37235779

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	2
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota	13
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus danicus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus danicus

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Ecosystem Assignment (GOLD)

Name

The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Ocean
Coordinates	Lat. (^o)	-47.33333	Long. (^o)	-15.65	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Ocean

Coordinates

Lat. (^o)

-47.33333

Long. (^o)

-15.65

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F094655	Metatranscriptome	105	Y
F096567	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186603_108658	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1363	Open in IMG/M
Ga0186603_108765	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1351	Open in IMG/M
Ga0186603_117422	All Organisms → cellular organisms → Eukaryota → Sar	818	Open in IMG/M
Ga0186603_118055	All Organisms → cellular organisms → Eukaryota	782	Open in IMG/M
Ga0186603_119449	All Organisms → cellular organisms → Eukaryota	710	Open in IMG/M
Ga0186603_119614	All Organisms → cellular organisms → Eukaryota	703	Open in IMG/M
Ga0186603_119682	All Organisms → cellular organisms → Eukaryota	699	Open in IMG/M
Ga0186603_119906	All Organisms → cellular organisms → Eukaryota	688	Open in IMG/M
Ga0186603_120047	All Organisms → cellular organisms → Eukaryota	682	Open in IMG/M
Ga0186603_120067	All Organisms → cellular organisms → Eukaryota	681	Open in IMG/M
Ga0186603_120272	All Organisms → cellular organisms → Eukaryota	672	Open in IMG/M
Ga0186603_120800	All Organisms → cellular organisms → Eukaryota	649	Open in IMG/M
Ga0186603_121169	All Organisms → cellular organisms → Eukaryota	634	Open in IMG/M
Ga0186603_122032	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus danicus	599	Open in IMG/M
Ga0186603_122951	All Organisms → cellular organisms → Eukaryota	561	Open in IMG/M
Ga0186603_123922	All Organisms → cellular organisms → Eukaryota	525	Open in IMG/M
Ga0186603_124239	All Organisms → cellular organisms → Eukaryota	514	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186603_108658	Ga0186603_1086581	F096567	FILFRRKDQLHIKLFNTMKYSSLCVTVIMSLSIGDSVSLSKKKGKTKHGKKSKSTNKLEVPEIGGLIEKAFPMWEVDDKGNRKETKPCSVESCEWNPFYVTKRYDGLHPDYGGHPTDFDVKYHFFGASPYGGQPYSGTPHHCKKCDPDSIKAGECPKLETLDDKGPYGPGHVPPHIALASLTWGFQDRLYWIQEMFNYDVYGCRVTPEALLHMIRHYYPRTDGEKVPYPPPITPEGGDFQYEFPSGNGIDNQNPPYAPGPPHWCTEEMTKSGHWDGVCPYVFKGPDAGKYRHPHIAFAALEVYLANKAMPGKCANTWLENNPDFIDPGRVTTDTPFPLMDADTEDSKSVANWLGQPVLPWDYNSGDAKVIPGYFATHVYFAKCPIHASIKVPTHA
Ga0186603_108765	Ga0186603_1087651	F096567	FILFRRKDQLHIKLFNTMKYSSLCVTVIMSLSIGDSVSLSKKKGKTKHGKKSKSTNKLEVPEIGGLIEKAFPMWEVDDKGNRKETKPCSVESCEWNPFYVTKRYDGLHPDYGGHPTDFDVKYHFFGASPYGGQPYSGTPHHCKKCDPDSIKAGECPKLETLDDKGPYGPGHVPPHIALASLTWGFQDRLYWIQEMFNYDVYGCRVTPEALLHMIRHYYPRTDGEKVPYPPPITPEGGDFQYEFPSGNGIDNQNPPYAPGPPHWCTEEMTKSGHWDGVCPYVFKGPDAGKYRHPHIAFAALEVYLANKAMPGKCANTWLENNPDFIDPGRVTTDTPFPLMDADTEDSKSVANWLGQPVLPWDYNSGDAKVIPGYFATHVYFAKCPI
Ga0186603_117422	Ga0186603_1174221	F094655	NEHTCDIQGWSQVLFYPYALLYNAALSIVFLLIVRYSWSEEDFRKWSYVILCSPPLLVTLLFIPCMRYYKYMNYGGGWSCGFFPSPPGCNLIPGMECKEDIRNIFMYNDALAGCIVFVSSSIIIYACMRLFFVARQSDESMLAYRSSARGNYATSNKVAVSGLLYSGGNLLVVLPFIIFFICALAKVNGASFFWTFIILQVTIFQPLQGFLNALVYFRPKYLEYKEAKRKKKAALIANLAANP
Ga0186603_118055	Ga0186603_1180551	F094655	NEHTCDIQGWSALIFTSFALVYNSTLSIVFLLIVRHSWSEEDFRKWSYFILGSPPLLVTLLFIPCLRYYKYMNYTAGWQCNFNPSPPYCHVTPGMKCNEENLGIYDYQAFIGVCFLFLTSSIIIYACVRLFLVARQSDERMLAYRSSERSNYATSNTVAVSGLLYSGGNLLVVLPVIILIIGGFAKVNGASFFYTFLSLQLAIFLPLQGFFNALVYFRPKYLEYKNEKRREKAARTANLASNPTSS
Ga0186603_119449	Ga0186603_1194491	F094655	PLLVTLLFIPCMRYYKYMNYGGGSACYFTPSPPRCDVIPDMECNEDNLGIYTYYDLIAACLLVLSTSIIIYACVRLFLVARRSDESVRAYRSSAQGHYATSNRVAVSGLLYSGGNLLVVLPHIIWFIGFIAKVNGASFFWTFVSLQAAIFVPLQGFLNALVYFRPKYLEYKEAKRKEKAARTANLAANPTSP
Ga0186603_119614	Ga0186603_1196141	F094655	WSEEDFRKWSYFILGSPPLLVTLLFIPSLRYYTYMNYVGGWNCMFTPSPPGCAVIPGMECNEENLGIYDYTASIGGCLLFLSCIIILYACVRLFLVARQSDERMLAYRSSERSNYATSNTVAVSGLFYSGGNLLIVLPLIILIIGVFAKVDGASFFWTFFGLQWAIFQPLQGFFNALIYFRPKYLAYKNEKRKEKIAQTASLTATANR
Ga0186603_119682	Ga0186603_1196821	F094655	DFRKWSYFILCSPPLLVTLLFIPCFRYYKYMNYSQTTWHCLFTPSPSRCSLTPGMECNEDNMNIYKYGHSISVCLIFLCCSIIIYSCVRLFVVVRQSDERMIEYRPSERQNYRTSNRVAVSGLLYSGGNLLVLLPAIILLIGFVVNVNGASFFWTFFGFQMAIFEPLQGFFNALVYFRPQYLEYREEKRKEKAAQPVNLATNETSL
Ga0186603_119906	Ga0186603_1199061	F094655	LTVCYSWSEEDFRKWSYVILGSPPLLVTLLFIPCLRYYKYMNYTAGWFCDFTPSPPYCSVTPGMECNEENLGIYDYGALIGGCILFFSCSIIIYACVRLFLVARRSDERMLAYRSSERSNYATSNTVAVSGLFYSGGNLLVVSPSIIVIIGYVAKVEASFFYTFIGLQLAIFMPLQGFLNALVYFRPKYLEYKNEKRREKAARTANLASNPTSS
Ga0186603_120047	Ga0186603_1200471	F094655	MFTPSPPGCAVIPGMECNEENLGIYDYTASIGGCLLFLSCIIILYACVRLFLVARQSDERMLAYRSSERSNYATSNTVAVSGLFYSGGNLLIVLPLIILIIGVFAKVDGASFFWTFFGLQWAIFQPLQGFFNALVYFRPQYLEYKKEKRNEKVSQTTSATSP
Ga0186603_120067	Ga0186603_1200671	F094655	DFRKWSYFILCAPPVLVTLLVIPLMRYYKYVNYDGDWNCWFTPSPPLCAATPDMECNEDNLDIYKYFQLINGCILPFSTSIIIIYACVRLFLVARRSDESVRAYRSSAQGHYATSNRVAVSGLLYSGGNLLVVLPHIIWFIGFIAKVNGASFFWTFVILLIAIFVPLQGFFNALVYFRQKYLEYKKEKTRTANLALNPTTP
Ga0186603_120272	Ga0186603_1202721	F094655	WSEEDFRKWSYFILGSPPLLVTLLFIPSLRYYTYMNYVGGWNCMFTPSPPGCAVIPGMECNEENLGIYDYTASIGGCLLFLSCIIILYACVRLFLVARQSDERMLAYRSSERSNYATSNTVAVSGLFYSGGNLLIVLPLIILIIGVFAKVDGASFFWTFFGLQWAIFQPLQGFFNALVYFRPKYLEYKNEKRKEKTARTANLAANATSP
Ga0186603_120800	Ga0186603_1208001	F094655	NEHTCDIQGWSQVLFYPYALLYNAALSIVFLLIVRYSWSEEDFRKWSYVILCSPPLLVTLLFIPCMRYYKYMNYGGGWSCGFFPSPPGCNLIPGMECKEDIRNIFMYNDALAGCIVFVSSSIIIYACMRLFFVARQSDESMLAYRSSARGNYATSNKVAVSGLLYSGGNLLVVLPIIILAIGSIAKVNRASFFWTFIYLQGAIFMPLQGFLNALVY
Ga0186603_121169	Ga0186603_1211691	F094655	AGNEHTCDIQGWSLPLFYTSALFYNVALSIVFLLIVLYSWNEVDFRKWSYFILCSPPLLATLLLIPCMRYYKYMNYSGNWKCAFVPSPTGCSVTPGMECNEDNLDIYTYFQFLQSCLLLLSCSVIIYACVRLYLVARQGDESMIAYRRSAQGNYVTSNRVAMSGLLYSGGNFLVILPLFIMLIGGLAKINGASFFYTFVFFQMAIFVPLQG
Ga0186603_122032	Ga0186603_1220321	F094655	LFIPCLRYYKYMNYTSGTTWFCNFIPSPPYCLFTPGMECNEDNLDIYEDYFLITVCLNFLVCSIIIYSCVKLFLVSRQSDERMIEYRRSVGGNYVNSNRVAVSGLLYSGGNLLVVLPLIIYAIGALAKVNGASFFWTYVNLQLAIFQPLQGFLNALVYFRPKYLEYKNEKRREKAARVANLAANR
Ga0186603_122951	Ga0186603_1229511	F094655	WSEEDFRKWSYVILCSPPVLVTLLFIPCLRYYKYMNYEGGWYCTFGPSPPYCDVTPGLECIEDNLGIYMYYDWLNICISLLSASIILYACVRLFWVARQSDESVIAYRSGTQGHYATSNRVAVSGLLYSGGNLLVVLPVLIYFICARAVVESMSFWYYIEFHLVIFMPLQGFMNALVYFRPKYLEYK
Ga0186603_123922	Ga0186603_1239221	F094655	DFRKWSYVILCSPPVLVTLLFIPCLRYYKYVNYAGVWTCFFTPSPPLCSVTPGMECNEENLDIYMYYNLVGGCFFFLSSSIIIYACVRLFLVARQSDESVRAYRSSAQGNYATSNRVAVSGLLYSGGNLFVVLPLLIFFVGNLAKVIGDSFFWTFVILQGAIFMPLQGFLNALVY
Ga0186603_124239	Ga0186603_1242391	F094655	MELGTVLSLLPRLLIATCILVLSTSIIIYACVRLFLVARRSDESVRAYRSSAQGHYATSNRVAVSGLLYSGGNLLVVLPLIIMFIGFLAKVNGASFFWTFVDLVVAIFMPLQGFFNALVYFRPKYLEYKEAKNANLAANPTLXLFYCTLAW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017156: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 358 ?mol photons light - Corethron pennatum L29A3 (MMETSP0171)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences