NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017154

3300017154: Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 467 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1389)



Overview

Basic Information
IMG/M Taxon OID3300017154 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212327 | Ga0186615
Sample NameMetatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 467 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1389)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25128758
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae7
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Pacific Ocean
CoordinatesLat. (o)-39.0Long. (o)-176.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005668Metagenome / Metatranscriptome393Y
F020015Metagenome / Metatranscriptome226N
F025760Metagenome / Metatranscriptome200Y
F026581Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F067806Metagenome / Metatranscriptome125N
F078794Metagenome / Metatranscriptome116N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186615_104030All Organisms → cellular organisms → Eukaryota → Cryptophyceae1214Open in IMG/M
Ga0186615_104740All Organisms → cellular organisms → Eukaryota → Cryptophyceae1138Open in IMG/M
Ga0186615_105725All Organisms → Viruses → Predicted Viral1050Open in IMG/M
Ga0186615_106888All Organisms → cellular organisms → Eukaryota → Cryptophyceae965Open in IMG/M
Ga0186615_107013All Organisms → cellular organisms → Eukaryota → Cryptophyceae957Open in IMG/M
Ga0186615_107118All Organisms → cellular organisms → Eukaryota → Cryptophyceae951Open in IMG/M
Ga0186615_108294All Organisms → cellular organisms → Eukaryota → Cryptophyceae880Open in IMG/M
Ga0186615_111153All Organisms → cellular organisms → Eukaryota → Cryptophyceae740Open in IMG/M
Ga0186615_113793All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712637Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186615_104030Ga0186615_1040301F084315RRGKAMAIQYGTVPAEAVKPSRRPAMLYAAVAASALSVLVVVACFAYTAPKQETPAELLTQDLVLFKMAPPPEPWSPPANLWMYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK
Ga0186615_104740Ga0186615_1047402F025760MMFQIVPLSLLRDDPYSMYDTEKSGNWYKADEPWGAFLQTDGNPAVSIHPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGIY
Ga0186615_105725Ga0186615_1057251F026581LFGGICVGPLRPAFECAVARMVAVYNTFGEVEAARPARDGFKKYAGALAGAWAVLFVATVMIIGTSDNQESALLQAPTQMLAFKEFEPERNVFEEFDADFTPEMVYEYDLANEADWSKINIASGVEGSEVTEGIPDPYAVYHGLTVPEAVYTNPPPYDTTVVEIGEKIFGEPFHEYTAEEEGEAVMGKEYEDTIFDKTLNSVPEPNPSRDWEVLDVLNEPNPNY
Ga0186615_106888Ga0186615_1068882F032673RLSVVARTMVLLADYGSLSHEIERQPRSKVSAMVAGVALLSALALVGVVALNWDQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEMNKLVKKAPTMSLVTVNENTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186615_107013Ga0186615_1070131F087277SIVDMEASSPAPAPYSPPAQGRVGLTEVQRRARAAFVVVACLAGVFAVLVVVLGAPSQPNQGPISSSERWLEDGRASLNMFRVARTPMQKKALRGPELPHQVHYYSNVGDRLPVLGDEERETRQTYQELVQLGHTCVVMLRRAIWSVDPSVFNPQYELQVRLDAVHTALGQLAEQTGVYLTNPPVVKVDESVFDQAATDVSRFRKLVERIPEMHNAQYYWVVQYNIIRTELRKVSSQLTTVVNIAKHHFLEVADSIDSMRLNMEAIHQ
Ga0186615_107118Ga0186615_1071181F020015AAAPVAALSHQKPKRSWAVRAAVVSTLALAAVACLVLFSGEKAGEHTNNALGGSYYAVTKPPAFNFNRFIQNAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGVSGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYIKYNLGTIVYIAFAYDTPYGIGHWDQILHAGMMM
Ga0186615_108294Ga0186615_1082941F032673MIAGVAAVAALALVGFAAMVDQDDGSVALAALTQQEMQDMLVKADRMPTSELKAEVAQLEQGRTMSLVTVNDNTAGNPDGAVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSALTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDVMTCRDLGNGEVQYFRIRYD
Ga0186615_111153Ga0186615_1111531F067806GMASTPPAMAVEDLGLSYGSKINSFEIERRSGWRVRTTAAALAVIAVALVALLAVSNDAPREVTRASLSVEAMNGGTSGAHSNGDASDFIDTADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKVDASGFYYLNIQGEPGHALKTILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186615_111474Ga0186615_1114741F078794LQTNYGAIEAGQAAPVNAGNRKAVIGVVVAAALGLCALAGVIVMQNQQPTELMAVRLPNGRLVEAVPVQALFGPGDLPQPIEDDGLPGGDAKVVPGSNVHLFEHFSPPQPYGMDNRRDPPYDTSFGGMGYGSDGR
Ga0186615_113793Ga0186615_1137933F005668VLEDYAGTYRETRNAYLKAANQLKLATGPYKAARDAYVAATATYTKSLYE
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