NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017144

3300017144: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 735 ?mol photons light - Hemiselmis rufescens PCC563 (MMETSP1357)



Overview

Basic Information
IMG/M Taxon OID3300017144 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211887 | Ga0186175
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 735 ?mol photons light - Hemiselmis rufescens PCC563 (MMETSP1357)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31214218
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27122
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae8
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003766Metagenome / Metatranscriptome469Y
F005668Metagenome / Metatranscriptome393Y
F019841Metagenome / Metatranscriptome227Y
F020015Metagenome / Metatranscriptome226N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F087277Metagenome / Metatranscriptome110N
F096687Metagenome / Metatranscriptome104N
F097384Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186175_105602All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121324Open in IMG/M
Ga0186175_107373All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1149Open in IMG/M
Ga0186175_107771All Organisms → cellular organisms → Eukaryota → Cryptophyceae1116Open in IMG/M
Ga0186175_112689All Organisms → cellular organisms → Eukaryota → Cryptophyceae803Open in IMG/M
Ga0186175_113061All Organisms → cellular organisms → Eukaryota → Cryptophyceae785Open in IMG/M
Ga0186175_113530All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales763Open in IMG/M
Ga0186175_114398Not Available725Open in IMG/M
Ga0186175_115709All Organisms → cellular organisms → Eukaryota → Cryptophyceae670Open in IMG/M
Ga0186175_116971All Organisms → cellular organisms → Eukaryota → Cryptophyceae621Open in IMG/M
Ga0186175_117894All Organisms → cellular organisms → Eukaryota → Cryptophyceae589Open in IMG/M
Ga0186175_118453All Organisms → cellular organisms → Eukaryota → Cryptophyceae570Open in IMG/M
Ga0186175_119148All Organisms → cellular organisms → Eukaryota → Cryptophyceae547Open in IMG/M
Ga0186175_120187All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186175_105602Ga0186175_1056021F019841MFQFLRSVDFDTGYAGSGGVGPQSWVNGNGNSYIYFGSGQFDGQGSGHDYYGTLFMPPTGSVNNCDGGRSHTYCDYRQQ
Ga0186175_107373Ga0186175_1073731F003766SALPTNKAVALSPHQRTRRMPTWNAQTLAVSALTAYYMFYGVRAALGDESAVPDVRDGVKSTKLLYVQCLGYHMLMDVCFMIGVVVNDIAHVMMPAFVAAMLVVVYSQFIIDDLRGAAPAAAFALVFAFLVPGAPARNPMKWNLATGFFTFFGCIVLLVGIAIVVSGDDSAIPEQMKPLSLNQIKFIGTGELTLAAYIFGSILVGHAHAMQLFCVLFLCVAGALHWVIGDIAENPASIVFAMAHLCLWFVFRGKDEAKKQ
Ga0186175_107771Ga0186175_1077711F087277LGNMAAPEGESLHRRRARMAMAGVCATAMALIAVICLLESGKKGAREPISGGERWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNIQVHLDAVHTALQQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKTSSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186175_112689Ga0186175_1126891F032673LTLRGSMVSIADYGSVGASAPKAGRTNMRLLASVLALAAVALVAITTLATQDDGMSTLAAFNKQEMQNMLTKAKTMSTSQLQQEVNELEAEKQDGESMRTSQLVTVNQNTAANPEGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYA
Ga0186175_113061Ga0186175_1130611F020015EELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVEHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMARLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186175_113530Ga0186175_1135302F036560MPQKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186175_114398Ga0186175_1143981F005668MFQLMFDLGEYATTYRATRDAYLKAANELKLATGPYKAARDAYVAGTAT
Ga0186175_115709Ga0186175_1157091F020015AMGGAYYAVSKPPAFNFNRFIENAWIYDGRNADAGTEGFVEHMAKRHHYKLNIHRLNSLRDNEVRAALFSKSIHCIMFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFQLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDGSVYSAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFAYDTPYGVEHWDQVLHAAMMM
Ga0186175_116971Ga0186175_1169711F097384SSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATIAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186175_117894Ga0186175_1178941F101267RHRESTMGCCSSRPPGSHEWQSQVPGSYKQNPVPIVNKKKDLPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDSEDDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN
Ga0186175_118453Ga0186175_1184531F026478EESNMAARRLLLALSLLLSLSLVADAAKPKRKTVSIEDEETVKARDFALSEIIKLSDSYRDLKFNKVMSAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGEGKKSE
Ga0186175_119148Ga0186175_1191481F025760AYLQGEGNPAESKAEMLNMIAMPAMRSLYASPNGGRNDPYSMYDTRMGGNWYKADEPWGAYLQGEGNPAVTIHPYESDPSSGSFNPQAHTTWVPVDWSSWPNYNVHGYGVY
Ga0186175_120187Ga0186175_1201871F096687AAKSSEEMIERLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
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