NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017132

3300017132: Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 418 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1091)



Overview

Basic Information
IMG/M Taxon OID3300017132 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212328 | Ga0186616
Sample NameMetatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 418 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1091)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24522857
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae10
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Pacific Ocean
CoordinatesLat. (o)-39.0Long. (o)-176.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011850Metagenome / Metatranscriptome286Y
F020015Metagenome / Metatranscriptome226N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186616_103721All Organisms → cellular organisms → Eukaryota → Cryptophyceae1270Open in IMG/M
Ga0186616_104197All Organisms → cellular organisms → Eukaryota → Cryptophyceae1211Open in IMG/M
Ga0186616_106775All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis983Open in IMG/M
Ga0186616_106932All Organisms → cellular organisms → Eukaryota → Cryptophyceae973Open in IMG/M
Ga0186616_107102All Organisms → cellular organisms → Eukaryota → Cryptophyceae960Open in IMG/M
Ga0186616_107537All Organisms → cellular organisms → Eukaryota → Cryptophyceae928Open in IMG/M
Ga0186616_110432All Organisms → cellular organisms → Eukaryota → Cryptophyceae768Open in IMG/M
Ga0186616_111997All Organisms → cellular organisms → Eukaryota → Cryptophyceae696Open in IMG/M
Ga0186616_111998All Organisms → cellular organisms → Eukaryota → Cryptophyceae696Open in IMG/M
Ga0186616_112155All Organisms → cellular organisms → Eukaryota → Cryptophyceae689Open in IMG/M
Ga0186616_112277All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712683Open in IMG/M
Ga0186616_112448All Organisms → cellular organisms → Eukaryota → Cryptophyceae676Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186616_103721Ga0186616_1037211F084315VVVRYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK
Ga0186616_104197Ga0186616_1041971F084315VRRGKAMAIQYGTVPAEAVKPSRRPAMLYAAVAASALSVLVVVACFAYTAPKQETPAELLTQDLVLFKMAPPPEPWSPPANLWMYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK
Ga0186616_106775Ga0186616_1067751F011850KHPVAKVPHPSMARTAVVVACSLLLFAPSSHAFAPSGIARVGLPLKGNAVSARSARVTPAKMAMDPAHVSDIAQGAQTFLSSAIENVPFIDEVTGEPQGFTAPKNHFASVIGLWVLFALPVWSAAYKQAGCSTPDWFGVSQVSEDAPGIGLIAKASPEYAGPSFREGLEYVFSFFWKPPILIAWKPRADLDREAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETELGRRREKIAEESGWYTGNPSFGRSLIEYSEQTRKGKRDTGTVTISTEELAKLRAEAAKK
Ga0186616_106932Ga0186616_1069321F020015MVYGAAAPVAALSHQKPKRSWAVRAAVVSTLALAAVACLVLFSGEKAGEHTNNALGGSYYAVTKPPAFNFNRFIQNAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGVSGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYIKYNLGTIVYIAFAYDTPYGIGHWDQILHAGMMM
Ga0186616_107102Ga0186616_1071021F032673RLSVVARTMVLLADYGSLSHEIERQPRSKVSAMVAGVALLSALALVGVVALNWDQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEVNKLVKKAPTMSLVTVNENTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186616_107537Ga0186616_1075371F087277RMASIVDMEASSPAPAPYSPPAQGRVGLTEVQRRARAAFVVVACLAGVFAVLVVVLGAPSQPNQGPISSSERWLEDGRASLNMFRVARTPMQKKALRGPELPHQVHYYSNVGDRLPVLGDEERETRQTYQELVQLGHTCVVMLRRAIWSVDPSVFNPQYELQVRLDAVHTALGQLAEQTGVYLTNPPVVKVDESVFDQAATDVSRFRKLVERIPEMHNAQYYWVVQYNIIRTELRKVSSQLTTVVNIAKHHFLEVADSIDSMRLNMEAIHQ
Ga0186616_110432Ga0186616_1104321F025760MYDTEKSGNWYKADEPWGAFLQTDGNPAVSIHPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGIY
Ga0186616_111997Ga0186616_1119971F026478MSRPIFLLTVGLCLLAVVHSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDDDKKDEL
Ga0186616_111998Ga0186616_1119981F026478LCRRIRLCWIVRLGGLTMSRPIFLLTVGLCLLAVVHSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDDDKKDEL
Ga0186616_112155Ga0186616_1121551F101267MKCYMKGYLRTLPKKQRIWCMIHENNLYFMDSAEDTMPKKFLCFDGCLVNLKGKELEIQTPEIMEGAVPRATYKFMAEGEDVAMEWYEASLKASSRRN
Ga0186616_112277Ga0186616_1122771F096687VHSPVVFVGGSQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186616_112448Ga0186616_1124481F032673VALAALTQQEMQDMLVKADRMPTSELKAEVAQLEQGRTMSLVTVNDNTAGNPDGAVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSALTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDVMTCRDLGNGEVQYFRIRYD
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