NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017126

3300017126: Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 733 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1156)



Overview

Basic Information
IMG/M Taxon OID3300017126 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211923 | Ga0186211
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 733 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1156)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size34641523
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009840Metagenome / Metatranscriptome312Y
F015173Metatranscriptome256Y
F021038Metagenome / Metatranscriptome220Y
F034449Metagenome / Metatranscriptome174N
F096482Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186211_100391All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi3379Open in IMG/M
Ga0186211_101828All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi2222Open in IMG/M
Ga0186211_113470All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica949Open in IMG/M
Ga0186211_117356All Organisms → cellular organisms → Eukaryota778Open in IMG/M
Ga0186211_117684All Organisms → cellular organisms → Eukaryota765Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186211_100391Ga0186211_1003913F015173MLNDTAAFNSTGVAEDQVTLVGLFNQLLALLFPIWPWEPFIVMPFALEILRAKRKTGLSVGFVTIFAAVFCLAHGVGFVQAIDTVFYGGSGICACALPGAPDDIDTKAMCNMMAIHIFLMLLMGVFFARIALSPSRRVPVGGLEAVYCSRAALFFVVGGVSQGIPYWAVTFQYPERFEEFMRADGFYSARGITPGAVEFVSPLVWIVYGLYSYGELMSLVDSAGNTANDKASVGGALPPM
Ga0186211_101828Ga0186211_1018283F034449MLTLKLAALALLASSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI
Ga0186211_113470Ga0186211_1134701F096482RRRGPSPPLLGVARSDSHKGTTRLTMLLLVFVSAQSFQPLLRPPSPLPAARLSPPSCMARWTTQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL
Ga0186211_117356Ga0186211_1173561F021038MRMMSIQNFGFFVMYFAIWLATPAADVCAESRFAEGFMALTCFLVSFLCIGMGFGGYVDDGFTFPFYWIAHAVPAVGGYTTCTFLIPMARFSETGEACATLAPVVGSAVQAVYIVHAGLYWCYVCNMVSVTYFSFLKPTFGLKFKASICVALLALIEAIVFGAMAQYGVFAASPLPSASKKLFGMF
Ga0186211_117684Ga0186211_1176841F009840MRALSWLLLCSFRGTSALQPSRPGVSRRPLLQHALALGVLAPGAAAAAAEKKPSLKEVVAQLDAGTPKEERNAHGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP
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