NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017116

3300017116: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at -2 C, 35 psu salinity and 559 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0902)



Overview

Basic Information
IMG/M Taxon OID3300017116 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0211880 | Ga0186168
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at -2 C, 35 psu salinity and 559 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0902)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size34189197
Sequencing Scaffolds0
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081743Metagenome / Metatranscriptome114Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186168_113958Ga0186168_1139582F081743VHGEAFFIGTVLHSLDHTCQDWACEDPLWLDVDDERFGLMAQMGCVVKVGFIKDLPGLYFHKRFKGANHPFYSGFYAKAARIDKKYADVM

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