NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017089

3300017089: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 473 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1364)



Overview

Basic Information
IMG/M Taxon OID3300017089 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211817 | Ga0186105
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 473 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1364)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31742680
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi2
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009840Metagenome / Metatranscriptome312Y
F012191Metagenome / Metatranscriptome282Y
F049399Metagenome / Metatranscriptome146Y
F080844Metagenome / Metatranscriptome114N
F088199Metatranscriptome109N
F096482Metagenome / Metatranscriptome104Y
F098706Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186105_100488All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi2989Open in IMG/M
Ga0186105_108341All Organisms → cellular organisms → Eukaryota1203Open in IMG/M
Ga0186105_109741All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1105Open in IMG/M
Ga0186105_117312All Organisms → cellular organisms → Eukaryota735Open in IMG/M
Ga0186105_120278All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica615Open in IMG/M
Ga0186105_121179Not Available582Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186105_100488Ga0186105_1004882F012191MLARTSAVAKLGQRTAARGMGAGMGGGGHANNPCFTFQADWAKNKWKGYTFAIGVWTLGTAIPYYCCWFAQRKAGVEWV
Ga0186105_108341Ga0186105_1083411F098706MLSLSANRAEISTGNLRGDAGKFDNLKASWEKGLEIGDFKTKVAAKYDYNSNKDFLKEVSFSGDLVEGDSADDVSVSYELRRDFASKRSDVRLTASSQGTTLSAEYDTEDQLTEVAVQREVDLGDQKVDVQPSWMVKAKAARVKLMSGLNNGKDKVSAQFDYDVDGKEVGALEVGFTRQLKAGQTLAASYKPDKSDLEVSLQDDNFEDGATWTATANVPLESADANLLDAARVTLKRSWG
Ga0186105_109741Ga0186105_1097411F049399VLSFSEIPAEFADFVAAKQRQLAFNMLSSSAVGVVCANLAALVAGDASVELLVQTSQAQIPLLVLTLIASILSGKVENKPW
Ga0186105_116224Ga0186105_1162242F080844VPFLVGAVTTRLTVTVPSGISGGELVRVAAPDGSYHSVMVPAGLSAGQQFSVELLANPSDGCTGEMHKLRVELEAERHLRRETQQEAIRTRQALEALAQKRRADHALLHEMLRRQRRCIDHLTAQLGAA
Ga0186105_117312Ga0186105_1173121F009840APWAELIEFSMRARRSYLSWLLLCSFRGTSALHLPSRPGVSRRPLLQHALALGALAPGAATAAAEKKPSLKEVVAQIDAGTPKAERNAQGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP
Ga0186105_120278Ga0186105_1202781F096482LNMHIVVFLSAQSFQPLLRPASPLPAARLSPPSCMARWTQQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL
Ga0186105_121179Ga0186105_1211791F088199EIHMRCLVLFCARCWRGSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM
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