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Sample 3300017077
3300017077: Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o nitrate, at 20 C, 30 psu salinity and 736 ?mol photons light - Thalassiosira minuscula CCMP 1093 (MMETSP0739)
Overview
Basic Information
IMG/M Taxon OID 3300017077 Open in IMG/M GOLD Reference Gs0128947 | Gp0211787 | Ga0186075 Sample Name Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o nitrate, at 20 C, 30 psu salinity and 736 ?mol photons light - Thalassiosira minuscula CCMP 1093 (MMETSP0739) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 30340939 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F051162 Metagenome / Metatranscriptome 144 Y F067805 Metagenome / Metatranscriptome 125 Y F099352 Metatranscriptome 103 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186075_101550 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana 2433 Open in IMG/M Ga0186075_116229 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 713 Open in IMG/M Ga0186075_116398 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 703 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186075_101550 Ga0186075_1015503 F051162 HCCRFAHTINHLLLPHYLTSTIVSTMPLVKVFARVGMNKAIPLQSLQSKLCKIWSTKPETTKLILSRVEDWTSDSFDEDCYIDIRAYGKSERTREFVLEGMTQVQQAFADHDLIANVRLETYDGERYFHVPPKK Ga0186075_116229 Ga0186075_1162291 F067805 MGRKQQKQEELTLSKKDQKKVGKLTAQLPYHEGRGNLEEVTKIKDQIDAIWEKAREAQFA Ga0186075_116398 Ga0186075_1163981 F099352 PNPKPTPPQTQTAAVIVKFSIMVTSSFSGEEAFKGLGAPSLKSEVSVTSNSNRVLLDSEELNAASGAFNLCCAEAYSRFSELKRLKVHPGNMTKERDDVESCSANVYNGIQSSCTEQFEAVKACLSDNPKNWAKCASARRELEVCSVRNNLGELKK
