NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017067

3300017067: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 242 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0292)



Overview

Basic Information
IMG/M Taxon OID3300017067 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211808 | Ga0186096
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 242 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0292)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24536652
Sequencing Scaffolds0
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047706Metatranscriptome149Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186096_117109Ga0186096_1171091F047706REAKLMDGKQPTTVGYGITSDPIRGCSYDSLFAAVGQSIKEPWRVIGVDQTGCSVEDCNGYTLRKMRLSATGENVIERITINEEIGTVTYNKCDASGRPGDVERVLALHTPLRLEFYERSARSGLRVDWKAPYDMARETFSNMVQLALKIETSASDVVGYGLASKPATGVS
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