Sample 3300017061

Basic Information
IMG/M Taxon OID	3300017061 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211789 \| Ga0186077
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)

Sequencing Status

Permanent Draft

Sequencing Center

National Center for Genome Resources

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19241266
Sequencing Scaffolds	21
Novel Protein Genes	26
Associated Families	24

Dataset Contents

Total Genome Size

19241266

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Ecosystem Assignment (GOLD)

Name

The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F000076	Metatranscriptome	2620	Y
F000085	Metagenome / Metatranscriptome	2467	Y
F000326	Metagenome / Metatranscriptome	1295	Y
F000342	Metatranscriptome	1262	Y
F000631	Metagenome / Metatranscriptome	971	Y
F000665	Metagenome / Metatranscriptome	949	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F003249	Metatranscriptome	497	Y
F006386	Metatranscriptome	374	Y
F008230	Metatranscriptome	336	Y
F011080	Metatranscriptome	295	Y
F016530	Metatranscriptome	246	Y
F018723	Metagenome / Metatranscriptome	233	Y
F033310	Metatranscriptome	177	Y
F035313	Metatranscriptome	172	Y
F036711	Metagenome / Metatranscriptome	169	Y
F054880	Metatranscriptome	139	Y
F067800	Metagenome / Metatranscriptome	125	Y
F075673	Metatranscriptome	118	Y
F079552	Metatranscriptome	115	Y
F079569	Metagenome / Metatranscriptome	115	Y
F082720	Metatranscriptome	113	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186077_101991	All Organisms → cellular organisms → Eukaryota → Sar	1159	Open in IMG/M
Ga0186077_103121	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1020	Open in IMG/M
Ga0186077_103425	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	991	Open in IMG/M
Ga0186077_103636	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	970	Open in IMG/M
Ga0186077_104098	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	929	Open in IMG/M
Ga0186077_104668	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	887	Open in IMG/M
Ga0186077_105229	All Organisms → cellular organisms → Eukaryota → Sar	849	Open in IMG/M
Ga0186077_105792	All Organisms → cellular organisms → Eukaryota → Sar	813	Open in IMG/M
Ga0186077_106356	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	781	Open in IMG/M
Ga0186077_106502	All Organisms → cellular organisms → Eukaryota → Sar	773	Open in IMG/M
Ga0186077_106767	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	757	Open in IMG/M
Ga0186077_107284	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	729	Open in IMG/M
Ga0186077_107359	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	726	Open in IMG/M
Ga0186077_107980	All Organisms → cellular organisms → Eukaryota → Sar	698	Open in IMG/M
Ga0186077_108636	All Organisms → cellular organisms → Eukaryota → Sar	669	Open in IMG/M
Ga0186077_108933	All Organisms → cellular organisms → Eukaryota → Sar	656	Open in IMG/M
Ga0186077_109967	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	616	Open in IMG/M
Ga0186077_111915	All Organisms → cellular organisms → Eukaryota → Sar	551	Open in IMG/M
Ga0186077_112927	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	520	Open in IMG/M
Ga0186077_113424	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	506	Open in IMG/M
Ga0186077_113615	All Organisms → cellular organisms → Eukaryota → Sar	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186077_101991	Ga0186077_1019911	F000342	MAAPYGSMGDPMGMEAKAPGSVFTPGKRRRMNLVAICGNIFVPWFVFSGIFGGMSFSLHYQKPVLAWLLVLVGLALTGVSGFLAQKTKQVEREEMWYTFSTVALLIATVTAAVFGDMNFWYNMQPFYDIENLNTYPSVNPAREKGQQLMDAGRVYFADGAGLDMRKAMGFKNLDLYCVAPIVHGEDQLASYDFWAVGVNCCSGVSSDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAEMNAYRDDGFKYYLLGIFTHFAFNVFCVVAAVVGFSKIGRL
Ga0186077_103121	Ga0186077_1031211	F011080	VAEMKADLQRLRKPTAKCLEEIFQRYHQACLSTSPQMKEIEVKEPDVNWKALVMSLPPPHNKIVLGVGIRKILLAETECIYQGMYRFHVVRLDGSRAMFDFREAYNDAYHNYKDKSFKHDVELALRAAVLHQLVQHKEMLSKDSQMELVSHISGVVLPWEKAVVQHFPVTFQMLVDSFLNEHQLHMEEIKLDFCEDHGYRIKDQDLLDKWRIFHRSKAHYRVISTEEAMEQDHL
Ga0186077_103425	Ga0186077_1034251	F033310	VVQIARRDMPKGEEVFLWPGRLSNSEMVVRHGMSFQRNPIGIGRNITQPPNWNDNPSSKVRLEYEKYNCSTLEAFELRFSPLGTPSKSFVRCYRISWFLVNGWYSPGLQSRRRELDKWPPPKKYSKDDWLSWTQADAEVNRVILEYCRDMRGRLKDMLDSATAEDFRKSKDPLDKLIWKLRSEESKTFKECINAARAIS
Ga0186077_103636	Ga0186077_1036361	F082720	LSKADGVGFVFSPKLPCAKNIQRIVSIFVNQSGRICMRIFADIIRASAYVKPLELGDWVEMAIDLEGRVATFNIWANTENGWPDMVGKPVSTAVFPYGQRLGKLDPEHRPEGAKTGKSSHKPIKLNVGHLACVVKNVGVTINLAS
Ga0186077_104098	Ga0186077_1040981	F075673	KFRGSLLAGLYAGSGGLWVRNFFWNITFFEWKRFFHNSIDQLPEWAPSLYCRHIMWLRGLDVKDQANILTFEAATLATYLTFFNMAGDNVKTKMSVDPQRYPTFIGTCKDIWASHGVVGFARGSLFKGIYLILGATVAIGIQERLSAIMASFVGR
Ga0186077_104668	Ga0186077_1046682	F016530	ATVALPEDAWDMLGLSLPDGISEKSLSVKNGQVVLLTAGDWFSSQTSLEVDKRDAYRQQWQYEAEARLARVEAKKSPLEKSGEGLTAQKFSWSKDGQKPFEWRKLYHALVGGVGGLPDGGIITETVFNPTVMRMYTDHRVMGNIVLPGVSHVSLMAATGSVGFPNPGGISSEWHMSIKETLFERPYIVNSGAELIAAIQSGADPSQVGGMTPVGVPVVYCRATTVTKERGQIKPTIDWAK
Ga0186077_105076	Ga0186077_1050761	F000076	MAEEEGQEVIFTENAAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVVAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0186077_105229	Ga0186077_1052291	F036711	MPVWQNVNLKQKAIFEIIQREPVETLPYYLNDEELDFFVRGLSMGPHAKTYLPQIVEREKRPIYICRGYAPPTYSRVVKLRYYGPDPLLKDAGSNWSAGEPGELLEVVIGWRWLYAYWDGPLVDEVDGAWNEKQWPSIANPSWSWTSVKIVTPPYYVPEDGRPWRASNPALLPVSVPKGKGRGKGGSGSGMLDTTASEANPKVGCRTEDEWSQNKNN
Ga0186077_105792	Ga0186077_1057922	F035313	KQRALVVSYQLLLVLTASCRVFPKVVDMADVPAGYVNGCGHEFDPKEAEKSGKLTKDDPIQEHYKKGGFFGSITGAFGDKKTMYCHHMTTDCEPAVRAAKRQNIDCKTAEEVWNVIGRKPCCGRFAYDSKSGKLKCGAVVKKDHDNTCNGDTCLFVASGLDCPVPTWAHK
Ga0186077_106356	Ga0186077_1063561	F008230	WLLLDFLFNHTVRSPCKPAPKPPRFVKMAMRMTRRLLSVPAVKDFATYEAMKTSGTTMMVGFFNAHFSTAGKMYQSQFESMAASYPKAKFYTCDIDDVPMAAYDAEVTEVPSIVMLPLGLKPDGSPYDKSDMVVVAPELARFDQVLPRAKSVIDGTTVIENPEGQKPWEFDPATGTTMPPHQ
Ga0186077_106502	Ga0186077_1065021	F000665	SNPQFKGLENSLGAVYYNFPHSGAIQGFFDGHPVVNWRHENLMRLFFRALRSFMKPGGIVKVASNMNAVGVRYSYIIGSAVENEFIHFETMPFLEWHLHRYGRSYGDKRDIYKRPDAQKNQSYNAQAADRDMVYCFVYQPTGEQLPPQFVRLPPSLKTLSGCPDGPFKNLQGAAKLATAKQLHQRFVTEISGTHVG
Ga0186077_106667	Ga0186077_1066671	F000085	LPKPMAAPLALLLMLLPGGQGQNWPACQEQNTVIRNAGRALFANMQGFGAVVGCFQDDCQNSDKFVASSIESCTKVCLSIPECEFWVWGQEEGEQKCWLRLGDDGREAGEGWVSGARTCHPPNQQAQVMGNVECWIDGFDYDTCCDPKFGPSGNTQCWDGVFNYERCCFPRDEL
Ga0186077_106767	Ga0186077_1067672	F000631	MKMRTLSVVAVVLSALSVDAAQLRARATQEPDTACGKGFENLVQGSQDYYRTAAVELFKHPLHTMDNATFEQEFECWFASMCTTKCGGLPPLAEQRKKSLTDMCSNVADDWLKIWNLFTQEEVKWFKANYPSAPVEDAESDNKIFYKQAMETAKEVNKKEVLCLTLFTIDDECVKWPYIRLSK
Ga0186077_107284	Ga0186077_1072841	F000631	LISRSASSYPQLTMQLFLSTFLAVVAGLIYAGEAALLRAKTAQEPDTACGKGFENLVQGSQDYYRTAAVELFKHPLHTMDNATFEQEFECWFASMCTTKCGGLPSLAESRKKDLTATCSSVEADWLKVWNFFTQEEVKWFKTNYPAAEVEGSEEGTAIYYKQAMQTAKEINKKEMLCLTLFTIDDECVKWPYIRLSK
Ga0186077_107359	Ga0186077_1073591	F018723	KTEQSAAQRSFDLAMASKADPKAKAKGKEPLCEIFPVKDVFPLFQDRKTKQLPLNDVPYVLRACGLTIYGEEEAKIKAEVEKVDGMGKPVSLSTLQDWMENNQASYTRTHEEAYNALWTLCQEGIIGEVKDKSQTIIIPHLRHLVSEVGDKIKPDTFDKVIKGDNTITSDAINLDDFINYLKK
Ga0186077_107980	Ga0186077_1079801	F001618	MWRPDPGPCVARVEDWGDHPDDVEYMQTLKAMPKRIMKRRELVIKNTDLEKAVKKQGRVNFSVACWELSEYSKSSGLGSDAASIIHVFYESKDERKVLNAFSGAGVDLEKAEAVPVDPSSSNRHEQEIMYSQECLFIKDDCLYEEGPPLSPEELKRRFGM
Ga0186077_108248	Ga0186077_1082481	F000076	HLLPSLLDPTLKRWGEPITASSLHGAADAMAEEEGQEVIFTENAAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVVAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0186077_108636	Ga0186077_1086361	F003249	MFRLTVISTIAALGAFSAAEGKALLNIAKKSEWTPEPCEELEPGKPCAKLYEHPQGSTTVMPCPVESHTNADGCAALFGGKGDGEQCPQITCPKALGVTMKLVCTGGCCPTCWAPDHVIGLDRHKALENPAVVDPAPQAPTTCGGVRCFEPVCAEGQKKGHVEGDCCYSCVPGR
Ga0186077_108933	Ga0186077_1089331	F054880	KDGTPTFFEVPLSSTKYYLSIYATESSAYTLTVLADIGAFPRPGAAGKIEASQLRELQVQLSWSPASFIPTGISNVKKYWVYSSMLLDNDDRSNMAVFLRPDKIMNTVCGLTNNTDREYTTVLPSSCGTTCNVTVDGVITDKRYVFNVIVESARGYKMAYAGLIMKTDWEVVRQATSDKTLKVIGAVSGSVLGMVVIIYFLMLKLYG
Ga0186077_109967	Ga0186077_1099671	F079552	SRNWSLTSCSHFDFLSHPPLLASFPWIRVEEMKFAAVVLLALVADAAAGTLKAKTAEKYPVYSPGAAGSVETCEGITCQPVDCKPPFKYQSPEESGTCCPLCWADSVKVPEDRSWAKGMTGGVGMNNNADPILCRDVVCLAPDCPEYDQFFDGRCCTKCKSSKAVTPADLAKDFKEMK
Ga0186077_110200	Ga0186077_1102001	F000007	MGSTSKFLFALCNLAVITLVAGRANPKKDLAKEMMHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH
Ga0186077_111915	Ga0186077_1119151	F001154	MVRVIIGKPEDPWCEIELTEEDVEDWKKGVDIAEEKLKEVLQLPPITIENCHEREDGDLQWDEITFDEEVNGKYWHALIMALHRIREEFIKKQRKMKHLDWYLTMKQTSDKRNAKYYI
Ga0186077_111959	Ga0186077_1119591	F000326	ELANQQAYGELKAAKEDEIKAGQAQIDSKTGELADTDEKNAQAKVDVDDTKASLSADEQFLSMLKEKCSMADKEWEERQKTRQLEMEAVSQALAVLSGDDAHDLFTRTFNPSFLQSSSSSDASKDFRASASQVLAAVAAKYSNPKLGALAYQVKLDAFTRVKKAIDDMVAQLLKEKDDEIKHK
Ga0186077_112927	Ga0186077_1129271	F006386	GANDTGGVFAILWWLNFPDSGPGGKCDKAFYNKWLPVRVKHVVFVLSLWTLVWLLGSWGLDRPLIDGWKFTFMVSAFFRLGFALAWIFIANVNHCHMWNEFLARDPERTWPVLHACMAFALGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVEILANGLWK
Ga0186077_113424	Ga0186077_1134241	F067800	MSVPNMANVFMPAVGGLVGLWAASKIVPVMYHWDLIPGVGSPAYWERAKKIRYDYYSEGIVYSPYDTGDPIKELPAESVGKMYLRQKGGGWKLQSEM
Ga0186077_113615	Ga0186077_1136151	F079569	GIKFFEWENPKDLSKYQKMTSAQVDAALKGSNFLTKWVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017061: Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences