| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017049 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211828 | Ga0186116 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 277 ?mol photons light - Hemiselmis andersenii CCMP 439 (MMETSP1041) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 26150127 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 6 |
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712 | 1 |
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | ||||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005668 | Metagenome / Metatranscriptome | 393 | Y |
| F020015 | Metagenome / Metatranscriptome | 226 | N |
| F032673 | Metagenome / Metatranscriptome | 179 | Y |
| F082776 | Metatranscriptome | 113 | N |
| F087277 | Metagenome / Metatranscriptome | 110 | N |
| F096687 | Metagenome / Metatranscriptome | 104 | N |
| F101267 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186116_108378 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 985 | Open in IMG/M |
| Ga0186116_109770 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 886 | Open in IMG/M |
| Ga0186116_110166 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 861 | Open in IMG/M |
| Ga0186116_110355 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 851 | Open in IMG/M |
| Ga0186116_111233 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 799 | Open in IMG/M |
| Ga0186116_113433 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 686 | Open in IMG/M |
| Ga0186116_114633 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712 | 630 | Open in IMG/M |
| Ga0186116_117708 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186116_108378 | Ga0186116_1083781 | F020015 | AVWELMVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM |
| Ga0186116_109770 | Ga0186116_1097701 | F101267 | VNKKKELPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDSEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN |
| Ga0186116_110166 | Ga0186116_1101661 | F032673 | MVSIADYGSVGASAPKTPRTNMKLLASVLALAAVALVTITTLATQDDGMATLAAFNKQEMQNMLTKAKTMSTSQLQQEVNELEAEKQDGESMRTSQLVTVNENTAANPEGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYA |
| Ga0186116_110355 | Ga0186116_1103551 | F087277 | HIFIMAAPEGESIHRRRARMAMAGVCATAMALVAVICLLESGKQEAREPISGGEQWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNIQVHLDAVHTALQQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKASSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE |
| Ga0186116_111233 | Ga0186116_1112331 | F082776 | GRFIVMVATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS |
| Ga0186116_113433 | Ga0186116_1134331 | F020015 | VTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM |
| Ga0186116_114633 | Ga0186116_1146331 | F096687 | EKVCPGGSRNLIMIESLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR |
| Ga0186116_117708 | Ga0186116_1177081 | F005668 | MIAKLFDLEDYAGTYRETRNAYLKAANQLKLATGPYKAARDAYVAATAT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |