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Sample 3300017047
3300017047: Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 211 ?mol photons light - Florenciella sp. RCC1007 (MMETSP1324)
Overview
Basic Information
IMG/M Taxon OID 3300017047 Open in IMG/M GOLD Reference Gs0128947 | Gp0212061 | Ga0186349 Sample Name Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 211 ?mol photons light - Florenciella sp. RCC1007 (MMETSP1324) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 27797424 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location North Sea Coordinates Lat. (o ) 61.0 Long. (o ) 1.98333333 Alt. (m) N/A Depth (m) 10 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F028062 Metagenome / Metatranscriptome 192 Y F102200 Metagenome / Metatranscriptome 101 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186349_106022 All Organisms → cellular organisms → Eukaryota 1313 Open in IMG/M Ga0186349_109737 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula 918 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186349_106022 Ga0186349_1060221 F028062 RRHCSASVDNCLTYHPSIAAMKTTLSLILLGSATALPIYHNESTLCRNGRCDKQDLKYERIIPAQPGQQWNDAGGYCGSWAVQRATLAKGAWVSQQQVRDHTVDCGGHDSEILSCNIAEALDNLKISYEAFDYENTPLPQTDEYAKWLKAQLVAGNAVAWMIMWSGQSYPIYDLTPPAGMYGHVEPVIGIQSNHPLDDTEVYDDDVVLHYDDNGVRTINRLISSLPGTWAGEGEPADCGDYDYCIGNPYGFGWAVKGGFTSEKTDTMPASLSVDPWYKEPDTRSGEAPEALKGTLTVTGLTSGASYDIYRWDTVESAFVEYDDAHKRTTFDATDETYVFADDLGILSNGTTYYEAVKSA Ga0186349_109737 Ga0186349_1097371 F102200 TVTHVKPRPSPPQALPTMVSANGATIACGVVAALSVLAALPMLMGNADVIPESLKEGTIVDKKGTLKAMDPDLLAHFARSVGHEVFIFVTCVAASVANNRCALLAKFLTCGMLLSAGWHHAWGNENEVIGQVVLATVLGYFGFIRSGLTLPSTTWGKHAIACTLEACLMGAVALGLLSGSAEALPPALKSLNLGAVQSMGKDLGLAALCVLAGALDNNAPTLCKFLPVGIMVSAWSHAMMDDMQGAKLNSCFALGFAILGFGFAAPETGGKKAQ
