NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017044

3300017044: Metatranscriptome of coastal eukaryotic communities from Seto Inland Sea in f/2 medium with seawater, 14 C, 36 psu salinity and 214 ?mol photons light - Skeletonema japonicum CCMP 2506 (MMETSP0593)



Overview

Basic Information
IMG/M Taxon OID3300017044 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212369 | Ga0186657
Sample NameMetatranscriptome of coastal eukaryotic communities from Seto Inland Sea in f/2 medium with seawater, 14 C, 36 psu salinity and 214 ?mol photons light - Skeletonema japonicum CCMP 2506 (MMETSP0593)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size27112487
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema5
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationJapan: Seto Inland Sea
CoordinatesLat. (o)34.3Long. (o)132.4Alt. (m)N/ADepth (m).5
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034938Metagenome / Metatranscriptome173Y
F081743Metagenome / Metatranscriptome114Y
F099352Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186657_104616All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1870Open in IMG/M
Ga0186657_108614All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1204Open in IMG/M
Ga0186657_108780All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1181Open in IMG/M
Ga0186657_109455All Organisms → Viruses → Predicted Viral1094Open in IMG/M
Ga0186657_109571All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1081Open in IMG/M
Ga0186657_110586All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema962Open in IMG/M
Ga0186657_113801All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi631Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186657_104616Ga0186657_1046161F034938LGILLRGTMTANNAFNFDVPNTKIAPHNELQKEGQSDDEDFAAANLKPIKMVRWRGNLVSEKEAKALCHVFDNLQDHFGHQRPDPRIRVTTSLAHPGQGWSWNGDLDFSYDINGDQCNLAYVSMDVCVDLTPKLVHKHGQAMLNDYGSSWVYVYVPESTFDKFKCYVKAGTGWDVSDEGNVYDPNRNLVAIEAEIHHKSGQPKPSFWMLKDNDASGNETSFSRIGSIQEVSAQPHQQRTHRGVGIFSVSMEVEGTPNFEPTPGEDKAKLSFTLVSVRTWGITECVAPIVHAPASIK
Ga0186657_104710Ga0186657_1047102F081743PRFGKMAEVGRVVKVGFVSDVPGLYFHKRFKGSGHPFYEAVYRKAAKINKKFADNMDTCIIK
Ga0186657_108614Ga0186657_1086141F034938MGSVANVIPNVAEQRGNDDASSTSSTKMVQWRGNLVDEKEAKALRHVFDDLQDHFGHQRPDPQVKFEVSLEHPGHGQMWQADIDFTYNIRGDHCKLAYIGMDMCLDLTPKLIHKFGRPMLQGYGETWAYAYLPESTMEKIRAYVKAGTGWDVFVDGAVHDPNRNLVAIKAKLNNQDGQPKPSFWVVSETDSAQDDVSFSRIGAVQEVHNDATQKHIHRGVGIFSVTMEVEGTPNFKPNPLNNEANLVFTLVSVRTWGVTDCIAPIVHAPAPAY
Ga0186657_108780Ga0186657_1087801F034938MMADEAAANVIPKDDDESAASNTNTDNMVKWRGNYVPKEEAKALRHVFDELKDYFGHQKPDPTVRVNVASLTHPGSGPVWRGNLDFTYQIDGEHCNLGFIGMDVCVDLIPKRIYKDGELMLKDYGNSWVYVYLPRETLNKFKQYVKIGTGWSVSTEGTVDDHNRDMVAIEAKLHHLTGQPKPSFWVAKDRDASIEGMSFSRVGSVQEVNESSSQQRVHRGIGIFSVTMEVEGTQHFKPTPGSRDEVNLSFTLVSVRTWGITDCVAPIVHAPSKWF
Ga0186657_109455Ga0186657_1094551F034938MNMMMHYTKNTDDAERLSHYSAYPKIAHQPQPHTHVFRHNAVDHNDQIAAASRDDEETVATAANTLADWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNSSNLARLGNSGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKGYGESWVYVYLRQLTLDKVKSYVKTGTGWDVSDEGTVFDPNRNLVAIEAKMHDKGGQPKPSVWVANDKNASAQDMSFSRIGTVQDVSTHPSQQRIHRGVGIFAVSMEVEGNHSVMPTPGRGYEANLSFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186657_109571Ga0186657_1095711F034938RMTNMMSNNAKRVRADGGNDISGAAGGHRTMSNDAIILPKISADHNDQVAQRDDEESHANAGKTVLWRGNLVAEKEAKALCHVFDDMQDHFGHQRADPRVRFNAKLNHPSRDGQMWFGDLDFTYNINGEYCNLSYIGMDVCVDLCPKLVHKHGQLRLKNYGSSWVYVYLPQMTLDKFKSYVKTGTGWDVSDGGTVYDPNRNLVAIEAKIHHEPEQPKPSFWAVKDKDASGDMSFSRIGSVQEVNEHPHQQRIHRGVGIFSVSVEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGITDCVAPIVHAPNKWY
Ga0186657_110586Ga0186657_1105861F034938HSSMHFKENTDDAEVLPRRLAYPKMAASQPNAYVIRNRFAAYELPVAVAQRDDEETIPSIGNNMTQWRGNAVSEKEANALRYVFDDLQDHFGYQCVDPRVRFNNTNLKHLGNSGKWFGDLDFTYNIKGDHCNLSYIGIDVCVDLAPKLVHKHGQPMWKDYGKSFLYVYLPQLTYNKFKSYVKFGTGWDVSDEGTVYDPNRDMVAIEAKVQSGQCESSFWAAKEKPFEGAGDRSFSRIGTIQDVKSHSSQQRIHRGVGIFSVSMEVEGTPNFKPSPQMGEEVDLCFTLVSLRTWGTTDGIAPIVYVPHKEH
Ga0186657_113801Ga0186657_1138011F099352MVFNGAEAFKGASAPSLEREVSVTSNNNRALLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQYEAVKSCLSDNPDEWAKCASMRRELEVCSVKNNLGELKKLSS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.